PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L00168.1.p
Common NameEUGRSUZ_L00168
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 702aa    MW: 80525.7 Da    PI: 7.8394
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L00168.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.51.2e-1995186190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                       k+Y ++A++ GFsvrk++s+ +  +  i+k++fvC+++g++  +kk + +++r r++ r +C+ak+ ++ke     +kw+v ++++ HnHel 
  Eucgr.L00168.1.p  95 KYYGNFARKNGFSVRKEHSRLN-PQLCIYKHDFVCYRSGFAPVRKKPSGEHHRDRKSVRYSCNAKMYLSKEVvegVSKWCVVQFSNVHNHELL 186
                       69****************9998.5666*******************************************9987789**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-1795186IPR004330FAR1 DNA binding domain
PfamPF105515.1E-19301393IPR018289MULE transposase domain
PROSITE profilePS509669.854573608IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-8579608IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-6583610IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MAIWAQGLHR PFLAAKGPTA FHGLFCIVTS LSSKNIWIQR QQCPCGDWKC FVAYEGDNEE  60
ATVASQLAKA KAGSAEAIVV PYVGMVFKSD DDAFKYYGNF ARKNGFSVRK EHSRLNPQLC  120
IYKHDFVCYR SGFAPVRKKP SGEHHRDRKS VRYSCNAKMY LSKEVVEGVS KWCVVQFSNV  180
HNHELLEDNQ VRLLPAYRKI HAADQERILS LSKAGFPIHR IVKRDVRNFI QNKKKVVQEN  240
DALLNEKREN DIMELLEACK ASKQADEGFS YVYSVDDNDK LEHITWSYSN SVNAYTTFGD  300
VVHFDTSYRS STYGMLFGAW FGIDSNGRMI IFGCVLLQDE APQSFAWALQ MFVWFMRGRS  360
PQTILTDLDP GLRDAVRGKL ANTKHITCTW NISPKLSSWF SVPLGSQYAE FRSEFDALHY  420
VENTEDFELR WNEMVSLFGL GSDKRIALLY SIRNSWALCY TRGHFLARRT TVAFFRSVDS  480
FLKGIFSPNA CLRSFFDQVG ISATFKNQSH LEMQYMPSKA CIPMEEHARS ILTPFGFNAL  540
QNELVLAMQY AMSELADGSY LLHHYKKMDG DCLVMWIPEE EQIHCSCKEF ESSGILCRHA  600
LSVFIRKNYF QLPSKYFITR WLRESSRTCY DEPAPQDSDN EWFREYQSLS ASLFTESSLT  660
RGCTNYVRRE LMKEVKRILE EVRSMPETDG VAVDMTLSPT G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L00168.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052962.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_010052963.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A058ZW640.0A0A058ZW64_EUCGR; Uncharacterized protein
STRINGXP_010052961.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]