PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K03133.2.p | ||||||||
Common Name | EUGRSUZ_K03133, LOC104426469 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 560aa MW: 61155.9 Da PI: 7.614 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.5e-18 | 64 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk+Ia++++ R++ qc +rwqk+l Eucgr.K03133.2.p 64 KGGWTPEEDETLRNAVAVYNGKSWKKIAEHFP-DRSEVQCLHRWQKVL 110 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 61.8 | 1.4e-19 | 116 | 162 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++d+v ++G+ W++Ia+ ++ gR +kqc++rw+++l Eucgr.K03133.2.p 116 KGPWTQEEDDKIIDLVSRYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 162 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 51.6 | 2.1e-16 | 168 | 211 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +WT eE++ l +a++ G++ W+ Ia+ ++ gRt++++k++w++ Eucgr.K03133.2.p 168 KEAWTLEEELALMQAHRVNGNK-WAEIAKVLP-GRTDNSIKNHWNS 211 579*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.203 | 59 | 110 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.94E-16 | 60 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-15 | 63 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-16 | 64 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-22 | 66 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.89E-14 | 67 | 110 | No hit | No description |
PROSITE profile | PS51294 | 32.583 | 111 | 166 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.23E-31 | 113 | 209 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-18 | 115 | 164 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-18 | 116 | 162 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.76E-16 | 118 | 162 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-28 | 126 | 169 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-15 | 167 | 215 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.693 | 167 | 217 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.6E-15 | 168 | 211 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-23 | 170 | 217 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.79E-12 | 170 | 213 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MTVAGMAELK IEDCCLENRQ LTAASNSSLS EGSASATLKS PAVSSPATTS PSHRRTTGPI 60 RRAKGGWTPE EDETLRNAVA VYNGKSWKKI AEHFPDRSEV QCLHRWQKVL NPDLVKGPWT 120 QEEDDKIIDL VSRYGPTKWS LIAKSLPGRI GKQCRERWHN HLNPDIKKEA WTLEEELALM 180 QAHRVNGNKW AEIAKVLPGR TDNSIKNHWN SSLKKKLDFY LATGKLPPVA KSGLQNGSKD 240 ASKPTLAKRL VGCNKGANLN PQTSLGNGGT CKLEEENQDK LELMARHQEA CESSSILPSE 300 SADSGSAEFK SRIDVSSNLE VLAQSEDSGA CDKSDYKDVG TTPPEQALVY GFLCYEPPPL 360 ESCIPLDSEM NTHLLNQTCN SSPASPASFL TPPCERNGVF CTQSPESILR LAAETFPNTP 420 SILRKRKTQV AKHLFSNKTT KVDGEIVKDR VDSPDVGSNG SLEKSMSQNT SVYDSPCLSN 480 GASATMCNGG AFSASPPYRL RSKRTALLKS VEKQLDFTFE EMKLDGSTKS VDVPMKENVH 540 NAEGPSSHVT MISIQELKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-69 | 63 | 217 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-69 | 63 | 217 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K03133.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010037835.1 | 0.0 | PREDICTED: transcription factor MYB51 | ||||
Swissprot | Q6R032 | 1e-154 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | A0A059A686 | 0.0 | A0A059A686_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059A792 | 0.0 | A0A059A792_EUCGR; Uncharacterized protein | ||||
STRING | XP_010037835.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-143 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K03133.2.p |
Entrez Gene | 104426469 |
Publications ? help Back to Top | |||
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