PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02780.1.p
Common NameEUGRSUZ_K02780, LOC104426218
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 268aa    MW: 28933.8 Da    PI: 9.0729
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02780.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-19103151355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+++AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  Eucgr.K02780.1.p 103 YRGVRQRP-WGKYAAEIRDPK----KaARVWLGTFDTAEGAALAYDEAALRFKG 151
                       9*******.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.3E-37102165IPR001471AP2/ERF domain
PROSITE profilePS5103223.828102159IPR001471AP2/ERF domain
PfamPF008471.2E-12102151IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21102160IPR016177DNA-binding domain
CDDcd000185.59E-31102160No hitNo description
Gene3DG3DSA:3.30.730.109.2E-32102160IPR001471AP2/ERF domain
PRINTSPR003679.7E-11103114IPR001471AP2/ERF domain
PRINTSPR003679.7E-11125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEGRNWKRSK SQAGHVSEET EDGDRKRNNY AYPSSLMETA RSQQDTSAIV SALAQVIANP  60
AAAASHHASL SSSASLSQSS LHDHQAPDAQ VGKNKKLEVS RNYRGVRQRP WGKYAAEIRD  120
PKKAARVWLG TFDTAEGAAL AYDEAALRFK GNKAKLNFPE RVHSLPPPYG PACNASQPQS  180
QLLPPAFSSC DNHVGAQLMD GCAMPPPRPS YVRGQGPTSS ASASDYFQSL QPTPSLSSSS  240
SMPSPFHQHD PQHSFDGFSS SWRSSHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26100164368ATERF1
3gcc_A2e-26100164368ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02780.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037500.10.0PREDICTED: ethylene-responsive transcription factor ERF110
TrEMBLA0A059A5070.0A0A059A507_EUCGR; Uncharacterized protein
STRINGXP_010037500.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.11e-29ERF family protein