PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02547.1.p
Common NameEUGRSUZ_K02547, LOC104426036
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28027 Da    PI: 8.8686
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02547.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.97.4e-30959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+ey++
  Eucgr.K02547.1.p  9 KRIENKINRQVTFSKRRCGLLKKAHEISVLCDADVALIVFSTKGKLFEYAT 59
                      79***********************************************86 PP
2K-box103.42.8e-34771743100
             K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                       +s+   ++++++ +++ e+akLk+++e Lq++q++l+Ge+L+sLslkeLq+Le+qL+++lk+iRs+Kn+l++e+i+elq+k k+lqe+n++L 
  Eucgr.K02547.1.p  77 ESQVLTNNAETNGNWTLEHAKLKARMEILQKNQKNLMGEELDSLSLKELQNLEHQLDTALKHIRSRKNQLMYESISELQRKDKALQEQNNMLA 169
                       5555566778899******************************************************************************** PP

             K-box  96 kklee 100
                       kk++e
  Eucgr.K02547.1.p 170 KKVKE 174
                       **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.427161IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-32289IPR002100Transcription factor, MADS-box
CDDcd002651.65E-41276No hitNo description
PRINTSPR004041.3E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2785172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.87888178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRCGLLK KAHEISVLCD ADVALIVFST KGKLFEYATD  60
CCMERILERY ERYSYAESQV LTNNAETNGN WTLEHAKLKA RMEILQKNQK NLMGEELDSL  120
SLKELQNLEH QLDTALKHIR SRKNQLMYES ISELQRKDKA LQEQNNMLAK KVKEKEKALA  180
QQTQWDNPQD DGLTSSSVIL SQSLQPVNIG GPYHPSGIEE GAALGPPQHR NATLLPSWML  240
SHLQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-21187187Myocyte-specific enhancer factor 2B
1tqe_Q1e-21187187Myocyte-specific enhancer factor 2B
1tqe_R1e-21187187Myocyte-specific enhancer factor 2B
1tqe_S1e-21187187Myocyte-specific enhancer factor 2B
6byy_A1e-21187187MEF2 CHIMERA
6byy_B1e-21187187MEF2 CHIMERA
6byy_C1e-21187187MEF2 CHIMERA
6byy_D1e-21187187MEF2 CHIMERA
6c9l_A1e-21187187Myocyte-specific enhancer factor 2B
6c9l_B1e-21187187Myocyte-specific enhancer factor 2B
6c9l_C1e-21187187Myocyte-specific enhancer factor 2B
6c9l_D1e-21187187Myocyte-specific enhancer factor 2B
6c9l_E1e-21187187Myocyte-specific enhancer factor 2B
6c9l_F1e-21187187Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02547.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3063490.0AF306349.1 Eucalyptus globulus MADS box protein AP2L mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037260.10.0PREDICTED: truncated transcription factor CAULIFLOWER A isoform X1
SwissprotQ6E6S71e-116AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A059A5L80.0A0A059A5L8_EUCGR; Uncharacterized protein
STRINGXP_010037260.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-97AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]