PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02297.1.p
Common NameEUGRSUZ_K02297, LOC104425859
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 264aa    MW: 30298.8 Da    PI: 7.6676
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02297.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.4e-18449147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      rg W + Ede+l ++v+++G+++W++Ia++++ gR++k+c++rw++ 
  Eucgr.K02297.1.p  4 RGHWRPTEDEKLRELVERYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49
                      899*****************************.***********996 PP
2Myb_DNA-binding55.21.6e-175699146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      r ++T+eE+e+l+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Eucgr.K02297.1.p 56 RSPFTEEEEEKLLASHRIHGNR-WSVIARLFP-GRTDNAVKNHWHV 99
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.16154IPR017930Myb domain
SMARTSM007175.4E-15352IPR001005SANT/Myb domain
SuperFamilySSF466891.31E-29497IPR009057Homeodomain-like
PfamPF002499.6E-18449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-27557IPR009057Homeodomain-like
CDDcd001677.67E-14748No hitNo description
PROSITE profilePS5129420.41355105IPR017930Myb domain
SMARTSM007179.8E-1655103IPR001005SANT/Myb domain
PfamPF002492.0E-145698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2158103IPR009057Homeodomain-like
CDDcd001671.71E-125898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MCTRGHWRPT EDEKLRELVE RYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFT  60
EEEEEKLLAS HRIHGNRWSV IARLFPGRTD NAVKNHWHVI MARRSRERSR LYAKRAAQTL  120
MEERTRYSSP SLANKQQDVQ MMNMMMSASA TANYQLASSF VDNFSGLGQC AFAHAGLPLT  180
KQFHTDHQIS PDIPVREDKL QPTEFYDFLQ VNTDSNKSEV IDVVHARRDD EEVDQEAAND  240
SADNQAKGGS VPFFDFLSVR SSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-3331046107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02297.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037001.10.0PREDICTED: transcriptional activator Myb
SwissprotQ6R0C47e-88MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A059A4H10.0A0A059A4H1_EUCGR; Uncharacterized protein
STRINGXP_010037001.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28182769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.17e-89myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]