PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.K01476.3.p

Common Name

EUGRSUZ_K01476

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 343aa MW: 37549.2 Da PI: 6.9497

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.K01476.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	33.4	9.9e-11	1	23	33	55
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 ++lm+++gLtl+h+kSHLQkYRl Eucgr.K01476.3.p 1 MKLMGIPGLTLYHLKSHLQKYRL 23 79********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-9	1	24	IPR009057	Homeodomain-like
Pfam	PF14379	1.0E-25	71	116	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MKLMGIPGLT LYHLKSHLQK YRLSKNLHGQ ANSGNNKIGT VAVGGDRVPE TNGSHVHNLN 60 IVPQTNKNLP FSEALQMQIE VQRRLHEQLE VQRHLQLRIE AQGKYLQSVL EKAQETLGRQ 120 NVGSASLEAT KLQLSELVSK VSTQSLNSAF PDLKELQGLC AQQIQTNPPT DCSVDSCLTS 180 CEGSHKDQEI HNNGIGLRPY SGGSVLLDPK GITDEPRTEK IEFKWGGDLK EDRMFLSYGV 240 KEMERSFPGG LGQGHLSMSI GLEGGLGCSE VKNKAKEVGG SVNFLERLHS RADSVNMDSN 300 QRSCGNQLHY FEAKLDLNAR EETDVASSGK QFDLNGNGFG WG*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MKLMGIPGLT LYHLKSHLQK YRLSKNLHGQ ANSGNNKIGT VAVGGDRVPE TNGSHVHNLN  60
IVPQTNKNLP FSEALQMQIE VQRRLHEQLE VQRHLQLRIE AQGKYLQSVL EKAQETLGRQ  120
NVGSASLEAT KLQLSELVSK VSTQSLNSAF PDLKELQGLC AQQIQTNPPT DCSVDSCLTS  180
CEGSHKDQEI HNNGIGLRPY SGGSVLLDPK GITDEPRTEK IEFKWGGDLK EDRMFLSYGV  240
KEMERSFPGG LGQGHLSMSI GLEGGLGCSE VKNKAKEVGG SVNFLERLHS RADSVNMDSN  300
QRSCGNQLHY FEAKLDLNAR EETDVASSGK QFDLNGNGFG WG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.K01476.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036186.1	0.0	PREDICTED: myb-related protein 2 isoform X1
Swissprot	Q9SQQ9	1e-101	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A059A213	0.0	A0A059A213_EUCGR; Uncharacterized protein
STRING	XP_010036186.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.2	1e-104	G2-like family protein

Link Out ? help Back to Top
Phytozome	Eucgr.K01476.3.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]