PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G04030.2 | ||||||||
Common Name | MYR2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 393aa MW: 44514 Da PI: 7.0029 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.7 | 8.2e-31 | 45 | 98 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++ +tPkti+++m+++gLtl+h+kSHLQkYRl AT3G04030.2 45 KPRLKWTPDLHERFIEAVNQLGGAD-TTPKTIMKVMGIPGLTLYHLKSHLQKYRL 98 79*******************9999.9***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.511 | 42 | 101 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-30 | 43 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.27E-17 | 44 | 99 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-21 | 45 | 99 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-10 | 47 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.3E-25 | 146 | 191 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0005417 | anatomy | phloem | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MYYQNQHQGK NILSSSRMHI TSERHPFLRG NSPGDSGLIL STDAKPRLKW TPDLHERFIE 60 AVNQLGGADT TPKTIMKVMG IPGLTLYHLK SHLQKYRLSK NLNGQANNSF NKIGIMTMME 120 EKTPDADEIQ SENLSIGPQP NKNSPIGEAL QMQIEVQRRL HEQLEVQRHL QLRIEAQGKY 180 LQSVLEKAQE TLGRQNLGAA GIEAAKVQLS ELVSKVSAEY PNSSFLEPKE LQNLCSQQMQ 240 TNYPPDCSLE SCLTSSEGTQ KNSKMLENNR LGLRTYIGDS TSEQKEIMEE PLFQRMELTW 300 TEGLRGNPYL STMVSEAEQR ISYSERSPGR LSIGVGLHGH KSQHQQGNNE DHKLETRNRK 360 GMDSTTELDL NTHVENYCTT RTKQFDLNGF SWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-18 | 45 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-18 | 45 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-18 | 45 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-18 | 45 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 258807_at | 0.0 | ||||
Expression Atlas | AT3G04030 | - | ||||
AtGenExpress | AT3G04030 | - | ||||
ATTED-II | AT3G04030 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G04030.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT3G04030 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G04030 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ222089 | 0.0 | HQ222089.1 Arabidopsis thaliana myb family transcription factor (MYR2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_974216.1 | 0.0 | Homeodomain-like superfamily protein | ||||
Swissprot | Q9SQQ9 | 0.0 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A178VA50 | 0.0 | A0A178VA50_ARATH; MYR2 | ||||
STRING | AT3G04030.3 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT3G04030.2 |
Entrez Gene | 819558 |
iHOP | AT3G04030 |
wikigenes | AT3G04030 |