PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01471.1.p
Common NameEUGRSUZ_K01471, LOC104425241
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 330aa    MW: 37532.5 Da    PI: 8.0639
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01471.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.91.4e-5191361128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+ +yL+kk+++++l++ ++i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nr+++sgyWkatg+dk +l
  Eucgr.K01471.1.p   9 LPPGFRFHPTDEELILHYLRKKMTSTPLPV-SIIAEVDLYKFDPWELPGKATFGETEWYFFSPRDRKYPNGARPNRSAASGYWKATGTDKIIL 100
                       79****************************.89***************8888999************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ +g++ g+kk Lvfy+g+ pkg k++W+mheyrl
  Eucgr.K01471.1.p 101 DSsTGKNLGVKKALVFYQGKPPKGIKSQWIMHEYRL 136
                       9878899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-635169IPR003441NAC domain
PROSITE profilePS5100561.2419169IPR003441NAC domain
PfamPF023654.2E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MKNCLQPNLP PGFRFHPTDE ELILHYLRKK MTSTPLPVSI IAEVDLYKFD PWELPGKATF  60
GETEWYFFSP RDRKYPNGAR PNRSAASGYW KATGTDKIIL DSSTGKNLGV KKALVFYQGK  120
PPKGIKSQWI MHEYRLANSP VPIYSDKAIK LKELSMRLDE WVLCRIYKRS SAAYSITPMA  180
TASDDPEEEQ RLTREDINND NSTVDAIRPM MMMNGSSSFS NLFDAVDFSM LRNFLSDDYN  240
GQCSNADDVR DVLVSTQSAN QASLDQKMFQ SLPQLTSYSA ASQNPLKRKY SWNEDSDAAN  300
LVKRNLMSQT FLDQHVLLSP HLHHQFQGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-71617317172NAC domain-containing protein 19
3swm_B6e-71617317172NAC domain-containing protein 19
3swm_C6e-71617317172NAC domain-containing protein 19
3swm_D6e-71617317172NAC domain-containing protein 19
3swp_A6e-71617317172NAC domain-containing protein 19
3swp_B6e-71617317172NAC domain-containing protein 19
3swp_C6e-71617317172NAC domain-containing protein 19
3swp_D6e-71617317172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01471.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036180.10.0PREDICTED: NAC transcription factor 29
SwissprotQ84TD69e-95NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A059A1V60.0A0A059A1V6_EUCGR; Uncharacterized protein
STRINGXP_010036180.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77232540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-92NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]