PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K00238.1.p | ||||||||
Common Name | EUGRSUZ_K00238, LOC104424401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HSF | ||||||||
Protein Properties | Length: 287aa MW: 31565.5 Da PI: 9.5601 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.8 | 4.7e-35 | 25 | 116 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+y++++d++++ +isw+ +g+sf+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+k+ll Eucgr.K00238.1.p 25 FLTKTYQLVDDPAIDAVISWNGDGSSFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKRLL 108 9*****************************************************************99.........**************** PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 ++i+r+k Eucgr.K00238.1.p 109 REIHRRKI 116 *****985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.1E-38 | 17 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.8E-57 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.94E-35 | 22 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.5E-31 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-20 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-20 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-20 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MAAPPAEQSG SASGGESQRS VPTPFLTKTY QLVDDPAIDA VISWNGDGSS FIVWNPTVFA 60 RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFSNDCF RRGEKRLLRE IHRRKISASP 120 PAPAIVAAGR PRASPSNSGD EQGISSWSSP PSACGRNCAS EIMDENERLR RENVLLSREL 180 SRMKTLCSSI FSLMSNYANG GVRAEAAGEK KPLEPLGGNP EAEAAAAAAA ESPRLFGVPI 240 GAKRGREEEV RTEIKLEPLD CQRNGGRSRA EPWMKQCHRS NQRVFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 8e-28 | 25 | 119 | 20 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00575 | DAP | Transfer from AT5G62020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K00238.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101700 | 5e-66 | AK101700.1 Oryza sativa Japonica Group cDNA clone:J033060E19, full insert sequence. | |||
GenBank | AY344484 | 5e-66 | AY344484.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF2 mRNA, complete cds. | |||
GenBank | CT831026 | 5e-66 | CT831026.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111P18, full insert sequence. | |||
GenBank | CU406354 | 5e-66 | CU406354.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108F04, full insert sequence. | |||
GenBank | CU406884 | 5e-66 | CU406884.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109L05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010035111.1 | 0.0 | PREDICTED: heat stress transcription factor B-2b | ||||
Swissprot | Q9SCW4 | 3e-88 | HFB2A_ARATH; Heat stress transcription factor B-2a | ||||
TrEMBL | A0A058ZZB0 | 0.0 | A0A058ZZB0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010035111.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM965 | 28 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 7e-84 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K00238.1.p |
Entrez Gene | 104424401 |
Publications ? help Back to Top | |||
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