PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J02884.1.p | ||||||||
Common Name | EUGRSUZ_J02884, LOC104423038 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | Dof | ||||||||
Protein Properties | Length: 249aa MW: 26556.3 Da PI: 8.5981 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.7 | 7.1e-40 | 19 | 78 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++lkcprCdstntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rk k+ Eucgr.J02884.1.p 19 EQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNIPVGGGTRKTAKR 78 57899***************************************************8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 14 | 71 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-33 | 21 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.339 | 23 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 25 | 61 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MQQDPSSLFQ PTTRPQFPEQ EQLKCPRCDS TNTKFCYYNN YNLSQPRHFC KSCRRYWTKG 60 GALRNIPVGG GTRKTAKRAS SKSKRHNAGS GSDAGADHPQ APGSSQAHSR TTEEASQSPP 120 PGFVGPTLDL DPARFYGSPS DLERRMLDVN GSFSSLLGTS GPFLSILEGP NLNASGASSM 180 VRFGGLGDEV KPGHGHVPGS AREPGAAADG AENFMDIQNG DAGCWTGGSG WPDLASIPRV 240 RVFPDRER* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00199 | DAP | Transfer from AT1G51700 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J02884.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028132 | 2e-53 | AB028132.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-8. | |||
GenBank | AK061000 | 2e-53 | AK061000.1 Oryza sativa Japonica Group cDNA clone:006-203-F09, full insert sequence. | |||
GenBank | AK100892 | 2e-53 | AK100892.1 Oryza sativa Japonica Group cDNA clone:J023130J11, full insert sequence. | |||
GenBank | AK101321 | 2e-53 | AK101321.1 Oryza sativa Japonica Group cDNA clone:J033034E07, full insert sequence. | |||
GenBank | AP005284 | 2e-53 | AP005284.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1121A12. | |||
GenBank | AP014958 | 2e-53 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 2e-53 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. | |||
GenBank | GQ183532 | 2e-53 | GQ183532.1 Oryza sativa Japonica Group Dof-type zinc finger protein 05 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010033797.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.1 | ||||
Swissprot | O82155 | 3e-40 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | A0A059AHV0 | 0.0 | A0A059AHV0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010033797.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1269 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 2e-37 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J02884.1.p |
Entrez Gene | 104423038 |
Publications ? help Back to Top | |||
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