PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J01594.1.p
Common NameEUGRSUZ_J01594, LOC104422156
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 629aa    MW: 67219.5 Da    PI: 5.1463
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J01594.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.91.2e-1392596221374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       lv++L++cAeav++++l+la+al++++  la+++  +m+++a+yf+eALa+r++r    +y    p++ s ++s + +  +  f+e++P+lkf
  Eucgr.J01594.1.p 259 LVHTLMACAEAVQQENLKLADALVKHIGLLAASQNGAMRKVATYFAEALARRIYR----IY----PNDGSLDSSCNDIL-QMHFYETCPYLKF 342
                       689****************************************************....54....33333333333333.336********** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                       +h+taNqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +va++l
  Eucgr.J01594.1.p 343 AHFTANQAILEAFATASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPNNTDALQQVGWKLAQLADTIGVEFEFRGFVANSL 435
                       ********************************************************************************************* PP

              GRAS 187 edleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       +dle+ +L+++p   E++aVn+v++lh ll++++++++    vL+ +k ++Pk+v++veqea+hn++ F++rf+eal+yys+lfdsle +  +
  Eucgr.J01594.1.p 436 ADLEPAMLDIRPpeVETVAVNSVFELHPLLARPGAIDK----VLSSIKAMRPKIVTMVEQEANHNGPGFVDRFTEALHYYSSLFDSLEGSGVA 524
                       ************9999**************99999988....*********************************************888777 PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                         +++ ++++++lgr+i+nvvaceg +r+erhetl +W++r+++aGF pv+l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL++
  Eucgr.J01594.1.p 525 PPNQDLVMSEVYLGRQICNVVACEGPDRVERHETLVQWQARMGSAGFDPVHLGSNAFKQASMLLALFAgGEGYRVEENDGCLMLGWHTRPLIA 617
                       77999**************************************************************************************** PP

              GRAS 370 vSaWr 374
                       +SaW+
  Eucgr.J01594.1.p 618 TSAWQ 622
                       ****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.1E-3865138No hitNo description
PfamPF120411.7E-3765132IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098568.76233601IPR005202Transcription factor GRAS
PfamPF035144.3E-137259622IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MKRDHRDACS GGYGGGGGGE ASGASKGEPP SSSSTHSLPG SGKAKMVMWG EDDQDPSGGG  60
GGGMDELLAV LGYKVRSSDM AEVAQKLEQL EMVMGSAQED GISHLSYDAV HYNPSDLSSW  120
VQSMLFELNP PPPPQQVADA VLAAAESSST IAQHHRSHLG SRSQTQTRTL SQTSAPTQTQ  180
SQVIFNDDSE YDLRAIPGVA AFPQGDSDFE SAARKKMKTL NGGSNSLSSS SSSSAAGAAP  240
SESTRPVVLV DTQETGVRLV HTLMACAEAV QQENLKLADA LVKHIGLLAA SQNGAMRKVA  300
TYFAEALARR IYRIYPNDGS LDSSCNDILQ MHFYETCPYL KFAHFTANQA ILEAFATASR  360
VHVIDFGLKQ GMQWPALMQA LALRPGGPPA FRLTGIGPPQ PNNTDALQQV GWKLAQLADT  420
IGVEFEFRGF VANSLADLEP AMLDIRPPEV ETVAVNSVFE LHPLLARPGA IDKVLSSIKA  480
MRPKIVTMVE QEANHNGPGF VDRFTEALHY YSSLFDSLEG SGVAPPNQDL VMSEVYLGRQ  540
ICNVVACEGP DRVERHETLV QWQARMGSAG FDPVHLGSNA FKQASMLLAL FAGGEGYRVE  600
ENDGCLMLGW HTRPLIATSA WQLAAATQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-6626662126378Protein SCARECROW
5b3h_A7e-6626662125377Protein SCARECROW
5b3h_D7e-6626662125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J01594.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032696.10.0PREDICTED: DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A059AEG80.0A0A059AEG8_EUCGR; Uncharacterized protein
STRINGXP_010032696.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0RGA-like 2