PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J01266.1.p

Common Name

EUGRSUZ_J01266

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 294aa MW: 32884.3 Da PI: 9.3452

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J01266.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.2	7.8e-07	139	158	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ Eucgr.J01266.1.p 139 FSCPVCQKTFNRYNNLQMHM 158 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.01E-6	132	162	No hit	No description
SMART	SM00355	0.028	139	161	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.97	139	166	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.1E-6	139	158	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12874	1.8E-4	139	158	No hit	No description
PROSITE pattern	PS00028	0	141	161	IPR007087	Zinc finger, C2H2
SMART	SM00355	180	236	257	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MFLPLQPRYS QPFSYFSSSN LVTGTHCQTS ASSPPFEALP LINRLGLHMP DEPSPSHGSS 60 KQDESLFLQK ADADRDNDNG VTVALQIGLS VTPCPASELK KEETTVDAAD AIRCRLDKLS 120 QGHYWIPTPK EILAGPQQFS CPVCQKTFNR YNNLQMHMWG HGSEYRKGPE SLKGTGSTKA 180 RAQESNDGLM LQRIPCYCCA PGCKHNIRHP RARPLKDFRT LQTHFKRRHG YGSKPFTCRK 240 CSNKSFAVKG DWRTHEKNCG KIWYCVCGSD FKHKRSLNDH VRAFGLGHAP SFA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J01266.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010032420.1	0.0	PREDICTED: zinc finger protein WIP2
Swissprot	Q8W031	7e-93	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A059ACJ6	0.0	A0A059ACJ6_EUCGR; Uncharacterized protein
STRING	XP_010032420.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	3e-95	WIP domain protein 5

Link Out ? help Back to Top
Phytozome	Eucgr.J01266.1.p

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]