PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J01264.2.p
Common NameEUGRSUZ_J01264
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 362aa    MW: 40429.8 Da    PI: 8.09
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J01264.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-073454526
                      --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       C f+++ G C yG+rC++ H+
  Eucgr.J01264.2.p 34 VCTFYQK-GMCTYGNRCRYEHV 54
                      6******.***********997 PP
2zf-CCCH18.63.2e-06144165426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++C+ fa+ G C++G+ C+ +Hg
  Eucgr.J01264.2.p 144 SICS-FAAAGDCPRGEACPHIHG 165
                       6788.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7326IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-42955IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1732956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.061140167IPR000571Zinc finger, CCCH-type
SMARTSM003560.13141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF578503.26E-14199273No hitNo description
Gene3DG3DSA:3.30.40.101.4E-10202268IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00158208268No hitNo description
SMARTSM001841.2E-7209266IPR001841Zinc finger, RING-type
PfamPF000975.8E-8209266IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.578209267IPR001841Zinc finger, RING-type
PROSITE patternPS005180233242IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.21296324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.573296325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEYSHDWTAP QNNVCTFYQK GMCTYGNRCR YEHVKASRPW  60
SGASSSSSSS SRTSSQPPIS GCVPQVLTSR SGVHCSSTSV EVSSRSRPLG PRNQPAWNRG  120
FEQPDYVDGT DVIESRTVRP ADQSICSFAA AGDCPRGEAC PHIHGDLCPT CGKHCLHPFR  180
PEEREEHMKT CEKKQKQLEA LKLSQEIECS VCLDRVLSKP TAAERKFGIL SECDHAFCIT  240
CIRNWRSSSP TTGMDVNSSL RACPICRKLS YFVIPSVIWY TSKEEKQEII DNYKAKLKSI  300
DCKHFNFGDG NCPFGTSCFY KHAYRDGRLE EVVLRHLGAE DGETVIAKDI RFFLSTLHVS  360
L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J01264.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032416.10.0PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X4
RefseqXP_010032417.10.0PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X4
SwissprotE0X9N41e-175C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A059AEJ40.0A0A059AEJ4_EUCGR; Uncharacterized protein
STRINGXP_010032408.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-145C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]