PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J01083.3.p
Common NameEUGRSUZ_J01083, LOC104421787
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 351aa    MW: 36946.9 Da    PI: 4.7957
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J01083.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.92.4e-17254287134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Eucgr.J01083.3.p 254 CLHCEITKTPQWRAGPLGPKTLCNACGVRYKSGR 287
                       99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.1E-679342IPR016679Transcription factor, GATA, plant
SMARTSM004014.3E-15248298IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.49248284IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.6E-14252286IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.14E-14252311No hitNo description
CDDcd002027.69E-14253302No hitNo description
PfamPF003205.5E-15254287IPR000679Zinc finger, GATA-type
PROSITE patternPS003440254279IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MTGPNFIDEI DCGSFFDDFL DFPSEDIEAG LPVGKPDSLP SIWSAQPEPL PGSDAVFSGN  60
SSSSLSAELS VPYEDIVQLE WLSTFVEESF SGGSLTMSKE QVSNGGGGGG GGGSGGGSGN  120
NTDSSSQQFQ TSSPVSVLDS SSSCSVDNKP RPPSPEAINP ARCGRARSKR PRPANFNPRP  180
AIQLAPQQSS DVAENEPGSE NSEESNCLPV IKAPKKQASG GAEPKKKKKI KFTMPPAPPA  240
EADQGLPQQA VRKCLHCEIT KTPQWRAGPL GPKTLCNACG VRYKSGRLYP EYRPAASPTF  300
IPSLHSNSHK KVLEMRNKTT DNADDSGTAS AATDSLELIP NMSGWITCED *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168172KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J01083.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032183.10.0PREDICTED: GATA transcription factor 8 isoform X1
RefseqXP_010032184.10.0PREDICTED: GATA transcription factor 8 isoform X1
RefseqXP_010032185.10.0PREDICTED: GATA transcription factor 8 isoform X1
RefseqXP_010032186.10.0PREDICTED: GATA transcription factor 8 isoform X1
TrEMBLA0A059ACM40.0A0A059ACM4_EUCGR; GATA transcription factor
STRINGXP_010032183.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.27e-40GATA family protein