PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J00957.1.p

Common Name

EUGRSUZ_J00957, LOC104421692

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 300aa MW: 32443 Da PI: 7.4465

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J00957.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128	2.7e-40	35	96	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++sss Eucgr.J00957.1.p 35 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNRRSSS 96 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	33	93	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.6E-34	37	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.581	39	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MDSSGVQHQE MSGSLESMLV CTKPQQDNKK PRPQPEQALK CPRCDSTNTK FCYYNNYSLS 60 QPRYFCKSCR RYWTKGGTLR NVPVGGGCRK NRRSSSSSSS SSKRAQDQQL LTSSANSVLN 120 GLPGLSTFDS SDLTLAFARL QKQASGQFGL DDHDLPILGK PNIHPSDVLG NHGGFLDSLR 180 HGFIESHQGN FQNFYYGHGG ANAGDLMENG CGAGEMGLGY DQEMSGPQTT AAVTMTTMKQ 240 ELCSGGEGEN RILWGFPWQL NANYADGGNM MGELDSARGS GWSNGLSSPW HGLLNSPLM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J00957.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU947524	2e-35	EU947524.1 Zea mays clone 346044 mRNA sequence.
GenBank	KJ726977	2e-35	KJ726977.1 Zea mays clone pUT3678 C2C2-DOF transcription factor (DOF32) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010032040.1	0.0	PREDICTED: dof zinc finger protein DOF5.3
TrEMBL	A0A059ABJ3	0.0	A0A059ABJ3_EUCGR; Uncharacterized protein
STRING	XP_010032040.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6960	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	1e-45	Dof family protein

Link Out ? help Back to Top
Phytozome	Eucgr.J00957.1.p
Entrez Gene	104421692