PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J00587.2.p
Common NameEUGRSUZ_J00587, LOC104421368
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family YABBY
Protein Properties Length: 190aa    MW: 20704.2 Da    PI: 9.0213
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J00587.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY235.71.1e-7221612170
             YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 
                       +v  +se+vCyv+CnfCntilavsvPs+sl+++vtvrCGhC +llsvn+a a+q  +  +      +++  e++   + + +s    ++++s+
  Eucgr.J00587.2.p   2 SVEMASERVCYVHCNFCNTILAVSVPSSSLYTMVTVRCGHCGNLLSVNMAGAVQSAPLPDT----SQQPSSENMARGSGSSSS-SRPNNNTSN 89 
                       68899************************************************99999986....333344444433333333.333344444 PP

             YABBY  95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       + ss+   e  + e+pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Eucgr.J00587.2.p  90 KFSSF---EPIEAEAPRMTP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 161
                       44442...456789999999.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.9E-726161IPR006780YABBY protein
SuperFamilySSF470951.17E-8102154IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.7E-5109155IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSVEMASERV CYVHCNFCNT ILAVSVPSSS LYTMVTVRCG HCGNLLSVNM AGAVQSAPLP  60
DTSQQPSSEN MARGSGSSSS SRPNNNTSNK FSSFEPIEAE APRMTPIRPP EKRQRVPSAY  120
NRFIKEEIQR IKASNPDISH REAFSTAAKN WAHFPHIHFG LKLDGNKQGK ADQAIAGDHQ  180
GTHKSHGFY*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J00587.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6940152e-61FJ694015.1 Dimocarpus longan YAB2-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031585.11e-141PREDICTED: putative axial regulator YABBY 2 isoform X2
SwissprotQ9XFB02e-82YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A059ABF21e-140A0A059ABF2_EUCGR; Uncharacterized protein
STRINGXP_010031584.11e-126(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.13e-79YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]