PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J00107.1.p
Common NameEUGRSUZ_J00107, LOC104423328
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 364aa    MW: 39712.3 Da    PI: 7.0899
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J00107.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.61.3e-28187247259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp ++e++Y+g+H+++
  Eucgr.J00107.1.p 187 EDGYTWRKYGQKEILGSKFPRGYYRCTHQklyHCPAKKQVQRLDNDPFTFEVMYRGDHTCH 247
                       7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-27182248IPR003657WRKY domain
SuperFamilySSF1182902.62E-25184248IPR003657WRKY domain
SMARTSM007744.0E-36186248IPR003657WRKY domain
PROSITE profilePS5081120.621187249IPR003657WRKY domain
PfamPF031067.5E-26187247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDDTINSILR GCRLARDLEH NLPNLANQPN LLAVSCEQII QVFSVIRERL RHNPLDAGSG  60
RYREMQEMRR SEVQAGSGSS NLEEWLKSSG YAQSILQQTQ CWAGTSGART GNTEGPMEAM  120
GAVAMGEGPF VRLGGGGEEM QAPDVSSDRR RSASSSSERT RRRNSDAEKR TIRVPAPRMG  180
NTEIPPEDGY TWRKYGQKEI LGSKFPRGYY RCTHQKLYHC PAKKQVQRLD NDPFTFEVMY  240
RGDHTCHMSS TAPSIPPPPP ASLDMAPIAA TQPISASVSA PLPRWLPVDF GMGGASGSRN  300
MAVGGSEAGP STSGSRRGKE AEYPLVADLA DAMFNSGSSS TNSMDFIFPS STEDKREEDD  360
KKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-19187246968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J00107.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034137.10.0PREDICTED: WRKY transcription factor 55
TrEMBLA0A059A9C00.0A0A059A9C0_EUCGR; Uncharacterized protein
STRINGXP_010034137.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.18e-49WRKY DNA-binding protein 55