PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02695.1.p
Common NameEUGRSUZ_I02695, LOC104419933
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 193aa    MW: 21859.3 Da    PI: 4.6944
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02695.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.53.6e-3881251128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrF Ptdeelvv++L++k++  +++  +vi+++++y ++Pw+L+ k+ +e ++wyfFs++         + r+t +gyWk  g  ++v+
  Eucgr.I02695.1.p   8 LPPGFRFYPTDEELVVHFLQRKAALLPCHP-DVIPDLELYPYDPWELEGKALSEGNKWYFFSRK--------TPDRITGNGYWKPMGD-EPVF 90 
                       79*************************999.99***************77778899*****997........4689**********98.6777 PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++++ vg+k++Lv+y g+ap g++t+W+mheyrl
  Eucgr.I02695.1.p  91 TSSSKRVGMKQSLVYYLGEAPGGTRTNWIMHEYRL 125
                       77999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-485158IPR003441NAC domain
PROSITE profilePS5100545.6318160IPR003441NAC domain
PfamPF023651.6E-249125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLQRKA ALLPCHPDVI PDLELYPYDP WELEGKALSE  60
GNKWYFFSRK TPDRITGNGY WKPMGDEPVF TSSSKRVGMK QSLVYYLGEA PGGTRTNWIM  120
HEYRLSNGTN SGSSSSRSSK RKGYPKIDYS KWVVCRVYEH GDDDNDDNGA ELSCLDEVFL  180
SLDDLDEIST PN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-46415913164NO APICAL MERISTEM PROTEIN
1ut4_B4e-46415913164NO APICAL MERISTEM PROTEIN
1ut7_A4e-46415913164NO APICAL MERISTEM PROTEIN
1ut7_B4e-46415913164NO APICAL MERISTEM PROTEIN
3swm_A4e-46416016168NAC domain-containing protein 19
3swm_B4e-46416016168NAC domain-containing protein 19
3swm_C4e-46416016168NAC domain-containing protein 19
3swm_D4e-46416016168NAC domain-containing protein 19
3swp_A4e-46416016168NAC domain-containing protein 19
3swp_B4e-46416016168NAC domain-containing protein 19
3swp_C4e-46416016168NAC domain-containing protein 19
3swp_D4e-46416016168NAC domain-containing protein 19
4dul_A4e-46415913164NAC domain-containing protein 19
4dul_B4e-46415913164NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02695.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030072.11e-142PREDICTED: NAC domain-containing protein 104
SwissprotQ8GWK69e-78NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A059ASW01e-140A0A059ASW0_EUCGR; Uncharacterized protein
STRINGXP_010030072.11e-141(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-78xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]