PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I01908.1.p | ||||||||
Common Name | EUGRSUZ_I01908, LOC104420668 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 254aa MW: 28281 Da PI: 7.2601 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.9 | 3e-37 | 10 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCa+Ck++rrkC k+C+lapyfpa+qpk f+n+h+lFG+sn++k+lk++p++ +++am+s+++e+++ra+ Pv+G++ i++l ql+q+ +e Eucgr.I01908.1.p 10 ACAVCKFQRRKCHKECPLAPYFPADQPKMFQNAHRLFGVSNITKILKQAPPDLKQEAMQSVIFESNMRAQYPVHGCCWYIRRLLCQLHQVTEE 102 7******************************************************************************************** PP DUF260 94 lallkeel 101 l+++++++ Eucgr.I01908.1.p 103 LQHVNTQI 110 **999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.773 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-35 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MTIKGGTSQA CAVCKFQRRK CHKECPLAPY FPADQPKMFQ NAHRLFGVSN ITKILKQAPP 60 DLKQEAMQSV IFESNMRAQY PVHGCCWYIR RLLCQLHQVT EELQHVNTQI AMCRDQVSAS 120 ASPSHYPPPP ELQLGNVHAD AVPTRQSFPG VFVNGESTKQ SIMSQQPYNY EPENTSHVGA 180 AQPNLASLPE LLMNYGADVF SYEDVPFDTI TIDKEESSTE SSFSFKNMTH SIEHASRNDL 240 KNAAAGFSLK SVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-26 | 6 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-26 | 6 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I01908.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010030769.1 | 0.0 | PREDICTED: LOB domain-containing protein 27 | ||||
TrEMBL | A0A059AQV5 | 0.0 | A0A059AQV5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010030769.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-40 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I01908.1.p |
Entrez Gene | 104420668 |