PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I01308.1.p | ||||||||
Common Name | EUGRSUZ_I01308, LOC104418869 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | SRS | ||||||||
Protein Properties | Length: 221aa MW: 24277.8 Da PI: 7.6997 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 182.1 | 2.3e-56 | 13 | 155 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 +++CqdCGnqak+dC+++RCRtCCks+gf+C+thvkstWvpa++r +r+qq+++ ++ ++ +++r+ + ++ + t+ + + Eucgr.I01308.1.p 13 SSSRCQDCGNQAKRDCEYRRCRTCCKSKGFHCQTHVKSTWVPAYRRHQRHQQEQQHQHL----LNSVPVHQQRSIQPQNPKRHRDTS---TFP 98 5679********************************************98887665333....344555555655333333333333...334 PP DUF702 97 kkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153 +e +lP+evss+a frcvrvs dd + e++aYqt+v+igGh fkGiLydqG++ Eucgr.I01308.1.p 99 GLGTE-GNLPAEVSSTATFRCVRVSIEDDdAAEHYAYQTSVNIGGHAFKGILYDQGPD 155 44444.56****************9888845566**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.4E-55 | 14 | 155 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.0E-27 | 17 | 58 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.0E-23 | 106 | 154 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MMMMRGQSGM STSSSRCQDC GNQAKRDCEY RRCRTCCKSK GFHCQTHVKS TWVPAYRRHQ 60 RHQQEQQHQH LLNSVPVHQQ RSIQPQNPKR HRDTSTFPGL GTEGNLPAEV SSTATFRCVR 120 VSIEDDDAAE HYAYQTSVNI GGHAFKGILY DQGPDTCYGT AAGESSSGDP TALPSNNDDN 180 NPAICTLASA SAPEESIYPC SYPFPLSASI SGTHYIFPKS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I01308.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010028633.1 | 1e-166 | PREDICTED: protein SHI RELATED SEQUENCE 3 isoform X1 | ||||
TrEMBL | A0A059ANI6 | 1e-165 | A0A059ANI6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010028633.1 | 1e-166 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9188 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 5e-45 | SHI-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I01308.1.p |
Entrez Gene | 104418869 |