PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00882.1.p
Common NameEUGRSUZ_I00882, LOC104418534
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 347aa    MW: 37494.5 Da    PI: 10.0493
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00882.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.54.8e-32275332359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+++dp ++++tYegeHnh+
  Eucgr.I00882.1.p 275 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERASDDPAMLIVTYEGEHNHS 332
                       9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.2E-17225271IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.8E-34261332IPR003657WRKY domain
PROSITE profilePS5081131.479268334IPR003657WRKY domain
SuperFamilySSF1182905.1E-27270332IPR003657WRKY domain
SMARTSM007743.8E-39273333IPR003657WRKY domain
PfamPF031061.0E-27275331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAVELMLGYR NDTTFSAKME ETAVKEAASG LESVGKLIKL LSHSQIQHPP AQEAPPLDLD  60
RDCRAVADDA VSKFKNVISL LGRTRTGHAR FRRAPVQSAL DKLPGQHPHQ PKIYYATPIQ  120
QIPPTPAPVP ALPLGHYGGS AVISKSNGVV GERRDSSTTI SFSDASFPFG SSLTADNISG  180
NVNYNNVNER HVVVKQQQCS SSSTFQITSS SISGKPPLSS SSSLKRKCSS ETLGSGRCAS  240
SSGRCHCSKK SRKLRLKRVV RVPAISLKMA DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS  300
SVRGCPARKH VERASDDPAM LIVTYEGEHN HSLSVVDSTS LILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22261333273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00882.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028208.10.0PREDICTED: probable WRKY transcription factor 15
SwissprotO221763e-80WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A059AM370.0A0A059AM37_EUCGR; Uncharacterized protein
STRINGXP_010028207.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.12e-45WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]