PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00556.1.p
Common NameEUGRSUZ_I00556, LOC104418331
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 25398.7 Da    PI: 6.1665
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00556.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.83e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+i n + rqvtfskRr g++KKAeELSvLCda+va+i+fss+gkl+ey+s
  Eucgr.I00556.1.p  9 KKITNATARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSSGKLFEYCS 59
                      689**********************************************96 PP
2K-box52.62e-189317320100
             K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       ++++L ke+ +  +++R++ Ge+L+ L++ eLqqLe+ Le +l+++ +kK e ++++i +lq+k  +l eenk+L++++ e
  Eucgr.I00556.1.p  93 DYSRLSKEVAEKGHQLRQMRGEELQGLNIDELQQLEKSLEAGLNRVIEKKGEKIVKEITDLQQKGAKLMEENKRLKQQVTE 173
                       68899999999999***************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.871161IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-40160IPR002100Transcription factor, MADS-box
CDDcd002652.21E-40275No hitNo description
PRINTSPR004042.5E-27323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.24E-32379IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.03287177IPR002487Transcription factor, K-box
PfamPF014862.2E-1693171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAREKIQIKK ITNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS SGKLFEYCSS  60
SMKEILERHH SHSENLGKLD QPSLELQLVE NGDYSRLSKE VAEKGHQLRQ MRGEELQGLN  120
IDELQQLEKS LEAGLNRVIE KKGEKIVKEI TDLQQKGAKL MEENKRLKQQ VTEISGRKTT  180
ATDSETIINE EGLSSESVTN VCSSSSGPPQ EDDSSDFSLK LGLPYNG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-22174174MEF2 CHIMERA
6byy_B6e-22174174MEF2 CHIMERA
6byy_C6e-22174174MEF2 CHIMERA
6byy_D6e-22174174MEF2 CHIMERA
6bz1_A6e-22174174MEF2 CHIMERA
6bz1_B6e-22174174MEF2 CHIMERA
6bz1_C6e-22174174MEF2 CHIMERA
6bz1_D6e-22174174MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00556.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2738730.0AY273873.1 Eucalyptus occidentalis SVP-like floral repressor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027953.11e-164PREDICTED: MADS-box protein JOINTLESS isoform X1
RefseqXP_018717707.11e-164PREDICTED: MADS-box protein JOINTLESS isoform X1
RefseqXP_018717708.11e-164PREDICTED: MADS-box protein JOINTLESS isoform X1
SwissprotQ9FUY61e-109JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A059AKT41e-163A0A059AKT4_EUCGR; Uncharacterized protein
STRINGXP_010027952.11e-163(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-95MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]