PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00225.1.p
Common NameEUGRSUZ_I00225, LOC104418139
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 838aa    MW: 93944.4 Da    PI: 9.6668
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00225.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.7e-07182201525
                       --SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                       lC+ fa  G C++G  C+F H
  Eucgr.I00225.1.p 182 LCKEFAV-GRCRRGTDCRFLH 201
                       9******.************* PP
2zf-CCCH25.22.8e-08232253426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       e+C++f+r GtC+ G++C+++H+
  Eucgr.I00225.1.p 232 EICNNFQR-GTCRWGASCRYIHS 253
                       89******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.197177204IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015179203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-5179202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-5181202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5227253IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5228254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15228255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-6231253IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-6232253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MSGKRRRHNS KWDLKEEPPV SPKKMDYRAW SGRADMPTYD SRIQPRRGSA DASHINGQRW  60
SSVEDKNVPK RHDLESSSRE FMLANRSLPR DGIGSADGGR KLDPVPWDRD GSYSTRMSPG  120
LDEWRKRNRS RSPRNKSDRS PGSRSRNWRI STSRSRSPVH GSRKDSGIYD KTRSRTGVSS  180
QLCKEFAVGR CRRGTDCRFL HQGDQQYNDN WESRHKKIGS TREYSERNRS SEICNNFQRG  240
TCRWGASCRY IHSDVPGKVY PKEAAATGEN DQRKRDLSLE LVGEGESHRR TVPSDPRITD  300
WSLNNRWEHK SGEERKLWDD QTKHNLLSID QKQLPPLESS VKLGMREPRA SEIFIGNTNM  360
SPDWNYQAQS SNQVTDDRSK ETYAAPSLIH NEPLVASRQL DQSLNASVQM YQLSATQRPG  420
TDESCLRIDN FRENGLLYNN NDNINKTVGL LTDSYIHPDT VQKQTIGQNN HKPCAMVPQM  480
SSVGQNQLGF PSDPRKAANI ISSLMKPLSE EGKPANHPPV TDANTLQVTS ANPPVTAMVS  540
GEHLRQLNDL SASLAQIFEA GKQLPQIFTA FNTHQGVDMT SVQSLASLGD QATPFLSSLS  600
VGSQKHYDPI SDSIEPKKPD SNEKQVHLSD VVADDSTKVT SSSLPPPSVA VVPNGTVLHN  660
ASSSGGFHES HQTSLLEPAE SSKVKDSSKL REDGEKEKVS DESKKGKGKD PHEDEHLENR  720
EGGTKDGENK KSKEPKGLRA FKFALVEHVK ELLKPTWKDG QIGKEAYKTI VKKAVDKVTS  780
TMQGASIPQS QEKIDHYLSF AQPKLTKLVQ AYVEKEKEKE EKEKEKEKEK EKARKAP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130KRNRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00225.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027683.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_010027685.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_010027686.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_010027688.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_018718599.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
TrEMBLA0A059AKN30.0A0A059AKN3_EUCGR; Uncharacterized protein
STRINGXP_010027683.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15764912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-15C3H family protein