PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00193.1.p
Common NameEUGRSUZ_I00193
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 159aa    MW: 18460.1 Da    PI: 6.6797
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00193.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.85.3e-33171381128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel.eev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrF Ptdeelv ++L++k ++ +++    + +++++ ++++PwdL+ k+  + +++++Fs+          +nr+t++gyWk    +++
  Eucgr.I00193.1.p  17 LPPGFRFLPTDEELVLHFLRPKKQQASVSSlYAHlVPDLKSHHHDPWDLHGKALWNGTHYFYFSRM--------MNNRITENGYWKDLDMEEP 101
                       79********************99999554133359*************95544444444444443........358**************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v+ + ge +g+kk+L+f+ g+ap+g++t+W+m+ey+l
  Eucgr.I00193.1.p 102 VFGEAGEMIGMKKSLTFHIGEAPTGQETNWMMQEYHL 138
                       ***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-3814144IPR003441NAC domain
PROSITE profilePS5100535.87317157IPR003441NAC domain
PfamPF023659.4E-2218138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MKDIKEKEED DGKMLKLPPG FRFLPTDEEL VLHFLRPKKQ QASVSSLYAH LVPDLKSHHH  60
DPWDLHGKAL WNGTHYFYFS RMMNNRITEN GYWKDLDMEE PVFGEAGEMI GMKKSLTFHI  120
GEAPTGQETN WMMQEYHLMS FHQLANPTQV SAKIPQKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-27713910146NAC domain-containing protein 19
3swm_B7e-27713910146NAC domain-containing protein 19
3swm_C7e-27713910146NAC domain-containing protein 19
3swm_D7e-27713910146NAC domain-containing protein 19
3swp_A7e-27713910146NAC domain-containing protein 19
3swp_B7e-27713910146NAC domain-containing protein 19
3swp_C7e-27713910146NAC domain-containing protein 19
3swp_D7e-27713910146NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00193.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027642.11e-110PREDICTED: NAC domain-containing protein 104 isoform X3
TrEMBLA0A059AKC31e-115A0A059AKC3_EUCGR; Uncharacterized protein
STRINGXP_010027642.11e-109(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-38xylem NAC domain 1