PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H04783.1.p

Common Name

EUGRSUZ_H04783, LOC104415786

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

CAMTA

Protein Properties

Length: 1048aa MW: 117034 Da PI: 5.4111

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H04783.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	179.1	5.5e-56	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 l+ ++rwl++ ei++iL+n++k++++ e+++ p+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+e+n++f Eucgr.H04783.1.p 20 LDAQHRWLRPAEICEILQNYKKFQIAPEPANMPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKAGSIDVLHCYYAHGEHNENF 112 6779*************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylevk 118 qrr+yw+Leeel++ivlvhylevk Eucgr.H04783.1.p 113 QRRTYWMLEEELSHIVLVHYLEVK 136 *******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	80.455	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.7E-77	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.3E-49	22	135	IPR005559	CG-1 DNA-binding domain
Pfam	PF01833	2.2E-4	464	544	IPR002909	IPT domain
SuperFamily	SSF81296	8.92E-16	464	550	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:2.60.40.10	6.3E-4	464	539	IPR013783	Immunoglobulin-like fold
CDD	cd00204	1.23E-13	640	755	No hit	No description
Gene3D	G3DSA:1.25.40.20	3.4E-17	641	758	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.873	644	757	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	9.17E-17	644	757	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	8.2E-8	668	759	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.671	696	728	IPR002110	Ankyrin repeat
SMART	SM00248	0.011	696	725	IPR002110	Ankyrin repeat
SMART	SM00248	190	735	764	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.78E-7	866	921	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.13	870	892	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.48	871	900	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0042	872	891	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.36	893	915	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.956	894	918	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0011	896	913	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1048 aa Download sequence Send to blast
MADARRYVLG NPLDIQQILL DAQHRWLRPA EICEILQNYK KFQIAPEPAN MPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKAGSIDVLH CYYAHGEHNE NFQRRTYWML 120 EEELSHIVLV HYLEVKGNRM NIHRIKDTEE TISLSHETEV NHETNSSLSS ISHQNNYQVP 180 SQTTDSSSPQ ASEYEDAESA YSNQANSGNH SIVDFQEAGM QNIDTGHSDP YYPASDSTDD 240 YQQNLSLKPG MDFLSLSRAD ITRECNVAGL ALEPQKNLDF SSWEPLLESC TSGGQSTLIQ 300 VLGSSAQPVT PDIMPKHAHD TVEQLFTDGI STKQEIGIQS QDQEELQVHL TNKIAESVST 360 ENGHHSNSFL DGNVALEVKA GCPSMGKQPF ANILAEEGLK KMDSFNRWMS KQLGDVNALL 420 GQSSTGAYWS AIVNDDGIDS SDSQEHDNNF MLTPSLSQEQ LFSIIDFSPS WTYADLEIKV 480 LITGRFLRSQ QDAELCKWSC MFGEVEVPAE VMADGVLRCH APVHKAGRVP FYVTCSNRVA 540 CSELREFEFR VNNSQDVISA DTKDGSINET LYMRFTKLLC SNTPRLSNSN IGENSQLRSK 600 ICSLLKDDDD AHWDHVMEST SDEFSTEGVR EQFFQKLLKE KLCEWLIEKA AEGGKGASVL 660 DEDGQGVLHF ASALGYDWAL QPTIIAGVSV NFRDANGWTA LHWAASFGRE RTVASLISLG 720 AAPGALTDPT PKYTTGRTPA DLASANGHKG IAGYLAESAL SAHLSLLNLD TAGGDASHGS 780 GGKAVQTISE RSPTPIREGD LPSGVSLKDS LAAVCNATQA AARIHQVFRV QSFQRKQLRE 840 FGDDNHGISD EHALTLVASK VYKPGQVDEP LHAAAVRIQN KFRGWKGRKE FLITRQRIVK 900 IQAHFRGHQV RKNRKNILWS VGIVEKVILR WRRKGSGLRG FKREELTDTS SMQDASSDED 960 EYDFLKEGRK QTEERLEKAL ARVKSMVQYP EARDQYRRLL NVVSEIQEAQ VEYEMTPDHN 1020 GEATDFDGDL TDLEQLLDDD TYMHLGP*

Sequence ? help Back to Top

Protein Sequence Length: 1048 aa Download sequence Send to blast

MADARRYVLG NPLDIQQILL DAQHRWLRPA EICEILQNYK KFQIAPEPAN MPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKAGSIDVLH CYYAHGEHNE NFQRRTYWML  120
EEELSHIVLV HYLEVKGNRM NIHRIKDTEE TISLSHETEV NHETNSSLSS ISHQNNYQVP  180
SQTTDSSSPQ ASEYEDAESA YSNQANSGNH SIVDFQEAGM QNIDTGHSDP YYPASDSTDD  240
YQQNLSLKPG MDFLSLSRAD ITRECNVAGL ALEPQKNLDF SSWEPLLESC TSGGQSTLIQ  300
VLGSSAQPVT PDIMPKHAHD TVEQLFTDGI STKQEIGIQS QDQEELQVHL TNKIAESVST  360
ENGHHSNSFL DGNVALEVKA GCPSMGKQPF ANILAEEGLK KMDSFNRWMS KQLGDVNALL  420
GQSSTGAYWS AIVNDDGIDS SDSQEHDNNF MLTPSLSQEQ LFSIIDFSPS WTYADLEIKV  480
LITGRFLRSQ QDAELCKWSC MFGEVEVPAE VMADGVLRCH APVHKAGRVP FYVTCSNRVA  540
CSELREFEFR VNNSQDVISA DTKDGSINET LYMRFTKLLC SNTPRLSNSN IGENSQLRSK  600
ICSLLKDDDD AHWDHVMEST SDEFSTEGVR EQFFQKLLKE KLCEWLIEKA AEGGKGASVL  660
DEDGQGVLHF ASALGYDWAL QPTIIAGVSV NFRDANGWTA LHWAASFGRE RTVASLISLG  720
AAPGALTDPT PKYTTGRTPA DLASANGHKG IAGYLAESAL SAHLSLLNLD TAGGDASHGS  780
GGKAVQTISE RSPTPIREGD LPSGVSLKDS LAAVCNATQA AARIHQVFRV QSFQRKQLRE  840
FGDDNHGISD EHALTLVASK VYKPGQVDEP LHAAAVRIQN KFRGWKGRKE FLITRQRIVK  900
IQAHFRGHQV RKNRKNILWS VGIVEKVILR WRRKGSGLRG FKREELTDTS SMQDASSDED  960
EYDFLKEGRK QTEERLEKAL ARVKSMVQYP EARDQYRRLL NVVSEIQEAQ VEYEMTPDHN  1020
GEATDFDGDL TDLEQLLDDD TYMHLGP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H04783.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010025463.1	0.0	PREDICTED: calmodulin-binding transcription activator 3 isoform X1
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A059B7C0	0.0	A0A059B7C0_EUCGR; Uncharacterized protein
STRING	XP_010025463.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8601	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Link Out ? help Back to Top
Phytozome	Eucgr.H04783.1.p
Entrez Gene	104415786

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]