PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H04617.2.p | ||||||||
Common Name | EUGRSUZ_H04617, LOC104415664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 252aa MW: 28704.8 Da PI: 8.4565 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.8 | 1.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Eucgr.H04617.2.p 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 83 | 6.5e-28 | 85 | 173 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 e+ + s+qqe+ +Lk+++e Lqr+qR+llGe+L++Ls keL++Le+qL+ slk+iRs++++++l+q+ +lq++ l+e+n++L+++l+e Eucgr.H04617.2.p 85 RESLELSCQQEYLRLKARYEALQRTQRNLLGEELGQLSSKELESLERQLDGSLKQIRSRRTQYMLDQLTDLQHR--LLHEANRTLNQRLME 173 55556689****************************************************************97..69********99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.515 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.76E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 6.41E-34 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.311 | 89 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.8E-21 | 91 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048833 | Biological Process | specification of floral organ number | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMLKTLERY QKCNYGALEP NVSARESLEL SCQQEYLRLK ARYEALQRTQ RNLLGEELGQ 120 LSSKELESLE RQLDGSLKQI RSRRTQYMLD QLTDLQHRLL HEANRTLNQR LMEGYQVNAL 180 QLNQHAEEVG GYGHPPPPPL PPQPLAQPHS EAFFHPLECE PTLQMGYQPD PVSSVITGGP 240 SINNFMPGWL P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 9e-40 | 75 | 174 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_B | 9e-40 | 75 | 174 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_C | 9e-40 | 75 | 174 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_D | 9e-40 | 75 | 174 | 1 | 104 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00605 | ChIP-seq | Transfer from AT1G24260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H04617.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF029975 | 0.0 | AF029975.1 Eucalyptus grandis MADS box protein (EGM1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010025293.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X2 | ||||
Swissprot | Q8LLR0 | 1e-138 | MADS4_VITVI; Agamous-like MADS-box protein MADS4 | ||||
TrEMBL | A0A059B8G0 | 0.0 | A0A059B8G0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010025292.1 | 1e-170 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.2 | 1e-122 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H04617.2.p |
Entrez Gene | 104415664 |
Publications ? help Back to Top | |||
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