PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H03872.3.p | ||||||||
Common Name | EUGRSUZ_H03872 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C3H | ||||||||
Protein Properties | Length: 226aa MW: 24127.4 Da PI: 5.6757 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.9 | 4.1e-09 | 59 | 84 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C +++rtG+C yG+ C+++H++ Eucgr.H03872.3.p 59 GVADCLHYLRTGYCGYGAGCRYNHPR 84 7899********************96 PP | |||||||
2 | zf-CCCH | 38.4 | 2e-12 | 181 | 206 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ Eucgr.H03872.3.p 181 DEADCVYYLRTGYCGYGARCRFNHPR 206 6789********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.235 | 57 | 85 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0015 | 57 | 84 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-7 | 59 | 84 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 61 | 86 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 63 | 84 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 179 | 206 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.22 | 179 | 207 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 181 | 206 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-7 | 182 | 208 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-6 | 185 | 206 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MNGYAGAHEG SGSDSSPERR DDSGADTGLE APMWQLGLGR DGGGGGGGES GPAYPERPGV 60 ADCLHYLRTG YCGYGAGCRY NHPRDRSTVV GVTRAGGAEY PERAGQPTHR LGLLERRLLF 120 VRPPVRTMNG YPGAQEGPRL NPLPEWPDDP RAETGLEEPM WQLGWGRGGG ESDPAYPERP 180 DEADCVYYLR TGYCGYGARC RFNHPRDRSA VVGATRAGGA VSQNE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H03872.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018716906.1 | 1e-132 | PREDICTED: zinc finger CCCH domain-containing protein 58 isoform X4 | ||||
TrEMBL | A0A059B4Z6 | 1e-158 | A0A059B4Z6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010024644.1 | 1e-128 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 2e-28 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H03872.3.p |