PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H03872.2.p | ||||||||
Common Name | EUGRSUZ_H03872, LOC104415104 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C3H | ||||||||
Protein Properties | Length: 276aa MW: 29388.2 Da PI: 5.6734 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.5 | 5.4e-09 | 59 | 84 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C +++rtG+C yG+ C+++H++ Eucgr.H03872.2.p 59 GVADCLHYLRTGYCGYGAGCRYNHPR 84 7899********************96 PP | |||||||
2 | zf-CCCH | 38 | 2.7e-12 | 181 | 206 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ Eucgr.H03872.2.p 181 DEADCVYYLRTGYCGYGARCRFNHPR 206 6789********************96 PP | |||||||
3 | zf-CCCH | 30 | 9e-10 | 233 | 256 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++rtG C yG+ C+F+H++ Eucgr.H03872.2.p 233 ADCIYYLRTGNCGYGAGCRFNHPR 256 68********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.235 | 57 | 85 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0015 | 57 | 84 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.3E-7 | 59 | 84 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 61 | 86 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 63 | 84 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.22 | 179 | 207 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 179 | 206 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-9 | 181 | 206 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-7 | 182 | 207 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-6 | 185 | 206 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1E-4 | 229 | 256 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.216 | 229 | 257 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 230 | 258 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-7 | 233 | 256 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-5 | 235 | 256 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MNGYAGAHEG SGSDSSPERR DDSGADTGLE APMWQLGLGR DGGGGGGGES GPAYPERPGV 60 ADCLHYLRTG YCGYGAGCRY NHPRDRSTVV GVTRAGGAEY PERAGQPTHR LGLLERRLLF 120 VRPPVRTMNG YPGAQEGPRL NPLPEWPDDP RAETGLEEPM WQLGWGRGGG ESDPAYPERP 180 DEADCVYYLR TGYCGYGARC RFNHPRDRSA LGLGSGSGGG EPDLAYPERP EAADCIYYLR 240 TGNCGYGAGC RFNHPRDRST VVGATRAGGA VSQNE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H03872.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018716904.1 | 1e-157 | PREDICTED: zinc finger CCCH domain-containing protein 58 isoform X2 | ||||
TrEMBL | A0A059B608 | 0.0 | A0A059B608_EUCGR; Uncharacterized protein | ||||
STRING | XP_010024644.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 2e-29 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H03872.2.p |
Entrez Gene | 104415104 |