PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02782.1.p
Common NameEUGRSUZ_H02782, LOC104414332
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 416aa    MW: 45380.7 Da    PI: 8.4585
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02782.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19232280355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  Eucgr.H02782.1.p 232 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAALAYDTAAYMLRG 280
                       8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.66E-31230290No hitNo description
SuperFamilySSF541711.18E-22231289IPR016177DNA-binding domain
PROSITE profilePS5103222.405231288IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-31231289IPR001471AP2/ERF domain
SMARTSM003801.6E-35231294IPR001471AP2/ERF domain
PRINTSPR003677.8E-11232243IPR001471AP2/ERF domain
PfamPF008471.3E-13232280IPR001471AP2/ERF domain
PRINTSPR003677.8E-11254270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MENEIPYMER LLVHKQFSSS AASSSCFNNG SSSGNGSPRS LVDPFLWGAL GTISSHAYQN  60
DSISNASTDK VPLSCGGDLK ESMFPFKAFL NPLAKITAPN PPSPSSQGSS SSTSRVPSDL  120
TLSWQEPEKK TPSTMDLLGM DTISESMASS TNNHLTQHGY VLWRPGSDWP TTDRSLDHLS  180
DRSSSRGSGD SCYWLGNTKI QPMKYTVRRS MASKKEHRST SSSSISSSGK LFRGVRQRHW  240
GKWVAEIRLP RNRTRVWLGT FDTAEEAALA YDTAAYMLRG DFAHLNFPDL KHELVKGNRS  300
LNSTTAALLE AKIRTISQGA SSRKKLHGGS PPKSVTNKEE FASESPSTSS PKDPMGSEWQ  360
LEFEARVVGS EMMSMSKKTQ EAVVSASADA DAVQLSRMPS LDMEMIWDAI LVSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19227288163ATERF1
3gcc_A2e-19227288163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02782.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023704.10.0PREDICTED: ethylene-responsive transcription factor ERF062
TrEMBLA0A059B1Q50.0A0A059B1Q5_EUCGR; Uncharacterized protein
STRINGXP_010023704.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-37ERF family protein