PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02226.1.p
Common NameEUGRSUZ_H02226, LOC104457362
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 340aa    MW: 36185 Da    PI: 9.0645
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02226.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.4e-191156147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +g+W++eEde l  +v+++G+++W++I++ ++ gR++k+c++rw + 
  Eucgr.H02226.1.p 11 KGPWSPEEDEALRLLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 56
                      79******************************.***********985 PP
2Myb_DNA-binding55.41.4e-1765107347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eEd+++v+a++++G++ W+tIar +  gRt++ +k++w++ 
  Eucgr.H02226.1.p  65 AFTPEEDDIIVRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 107
                       79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.891661IPR017930Myb domain
SuperFamilySSF466892.58E-328104IPR009057Homeodomain-like
SMARTSM007171.6E-171059IPR001005SANT/Myb domain
PfamPF002495.7E-191156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-261264IPR009057Homeodomain-like
CDDcd001671.05E-161355No hitNo description
SMARTSM007171.6E-1462110IPR001005SANT/Myb domain
PROSITE profilePS5129421.16763112IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-2365111IPR009057Homeodomain-like
PfamPF002491.4E-1465107IPR001005SANT/Myb domain
CDDcd001679.14E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MASRKEVDRI KGPWSPEEDE ALRLLVQKHG PRNWSLISKS IPGRSGKSCR LRWCNQLSPQ  60
VEHRAFTPEE DDIIVRAHAR FGNKWATIAR LLSGRTDNAI KNHWNSTLKR KCSPPLSPLA  120
EEGNNRAFDA AAAAAAGYDG DLSPRERPAK RSASAGPCLS PGSPSGSGMS DSSVHFVYRP  180
VAKTGPVVPP TVEATAAAVS STEDPPTSLS LSLPGAADPC EVSTRVAAEP AQPATRPISL  240
LPMASDPAPT PACAPPQAVA LPEYPRYSGN NNSSSIFPYP PPSPRVGADF SPFKAEFMAV  300
MQEMIRAEVR NYMAGMCSQA AAADIRNAVV KRIGIGKIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-42101113104C-Myb DNA-Binding Domain
1msf_C3e-42101113104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02226.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594181e-98KF059418.1 Salvia miltiorrhiza MYB-related transcription factor (MYB64) mRNA, complete cds.
GenBankKF0595281e-98KF059528.1 Salvia miltiorrhiza MYB-related transcription factor (MYB64) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070607.10.0PREDICTED: transcription factor MYB44
SwissprotO231602e-93MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A059B0620.0A0A059B062_EUCGR; Uncharacterized protein
STRINGXP_010070607.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-75myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]