PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H00907.1.p

Common Name

EUGRSUZ_H00907

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB

Protein Properties

Length: 277aa MW: 31212.6 Da PI: 6.7746

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H00907.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.7	7.5e-20	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll++ vk +G g+W+++ar+ g++Rt+k+c++rw++yl Eucgr.H00907.1.p 22 KGPWTAEEDALLANHVKIHGEGRWNLVARRAGLKRTGKSCRLRWLNYL 69 79********************************************97 PP
2	Myb_DNA-binding	48.2	2.5e-15	75	118	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++ Eucgr.H00907.1.p 75 RGNMTLEEQLLILELHCRWGNR-WSKIAQLLP-GRTDNEVKNYWRT 118 89******************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.699	17	73	IPR017930	Myb domain
SuperFamily	SSF46689	7.49E-31	19	116	IPR009057	Homeodomain-like
SMART	SM00717	3.9E-17	21	71	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-18	22	69	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-23	23	76	IPR009057	Homeodomain-like
CDD	cd00167	5.30E-13	24	69	No hit	No description
SMART	SM00717	1.8E-12	74	122	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.674	74	124	IPR017930	Myb domain
Pfam	PF00249	5.9E-14	75	118	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-21	77	122	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MRSQYDSPSS VRTEEVTSDV RKGPWTAEED ALLANHVKIH GEGRWNLVAR RAGLKRTGKS 60 CRLRWLNYLR PDLRRGNMTL EEQLLILELH CRWGNRWSKI AQLLPGRTDN EVKNYWRTRV 120 QKLAKHLKCD VNSKQFRDTM RCVWMPRFME QIRASTGQFR ASAQGPSDRP AEDPPRTHGI 180 GSGYPVYDDH RDSLPELSSS VSSSDSSDPR FSSSPSPNQA GGIGSECFGL GSGDGPNYWT 240 GCAQWWQPGV DAGEQEDSNG CLVGEDSLES LWNEEDA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-26	19	122	4	106	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269\|PubMed:22301384}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H00907.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269\|PubMed:22301384}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010069752.1	0.0	PREDICTED: transcription factor MYB108
Swissprot	Q10MB4	2e-75	MYB2_ORYSJ; Transcription factor MYB2
TrEMBL	A0A059AW27	0.0	A0A059AW27_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010069752.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47190.1	8e-79	myb domain protein 2

Link Out ? help Back to Top
Phytozome	Eucgr.H00907.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang A,Dai X,Zhang WH A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. J. Exp. Bot., 2012. 63(7): p. 2541-56 [PMID:22301384] Chen X, et al. The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway. Plant Cell Physiol., 2014. 55(3): p. 604-19 [PMID:24399239] Lv Y, et al. New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis. Plant Cell Environ., 2016. 39(3): p. 556-70 [PMID:26381647] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]