PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H00883.1.p
Common NameEUGRSUZ_H00883, LOC104456603
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 694aa    MW: 80014 Da    PI: 7.1152
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H00883.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1767.7e-2469160190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                       ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke      +w+v+++++ HnHel 
  Eucgr.H00883.1.p  69 EYYSNFARKNGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvnsATQWYVSQFSNIHNHELL 160
                       69********************8888.******************************************987666899*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2169160IPR004330FAR1 DNA binding domain
PfamPF105517.5E-20292385IPR018289MULE transposase domain
PROSITE profilePS509669.928564599IPR007527Zinc finger, SWIM-type
PfamPF044346.3E-7573599IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-6574601IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MKPSSNIWIR RQQCPCGDWK CYMRSEGDDQ PSVSPHPAKK ERTLSLPTTE AVFTPYVGQI  60
FKSDDEAFEY YSNFARKNGF SIRKARSTES QNLGVYRRDF VCYRSGFNQP RKKANVEHPR  120
DRKSVRCGCD AKLYLTKEIV NSATQWYVSQ FSNIHNHELL EDDEVRLLPA YRKIQEADQE  180
RILLLSKAGF PVNRIVKLLE IEKGLQPGQL PFIEKDVRNF VRTCKKTVQE NDALLNNKRE  240
SDAMELLEAC KHMTEKDADF VYVYTTDENE KVENIAWSYG HSARAFPAFG DVVTFDTSYR  300
SITYGLLLGI WFGMDNHGKA IFLGCVLLQE ESANSYSWAL QTFVRFMRGR RPQTILTDLD  360
SGLRDAIARE LTNTKHVISI WHVQSKLSSW FSTTLGSQYT EFKAELDTLC HSESMDEFEL  420
KWNRVIAQFG LVADKHIALL FSYRALWPLS LIRGYFVARA MTAEYSKSVD IFVKEILTSQ  480
TCLPVFFEQV GVASRSVNQA AENLQYMHMK TCMPIEEHAQ SILTPYAFKV LQHEMVLSLQ  540
YAMTEMANGS YLVRHYKKLD RECFVIWTPE DELIRCSCKE FEHSGILCRH SIRVLVAKNF  600
FQLPEKYFPL RWRLESSLVP VDDHNVPRSS YDCVQAFHSL AASLLTESLT SKERFNYVNR  660
ELSSLFDRVR DMPAADDSAA NMAPNNESES FQC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H00883.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018717155.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A059AXJ80.0A0A059AXJ8_EUCGR; Uncharacterized protein
STRINGXP_010069731.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]