PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H00572.1.p | ||||||||
Common Name | EUGRSUZ_H00572, LOC104456381 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 191aa MW: 20695.9 Da PI: 8.2169 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 90.7 | 1.3e-28 | 7 | 58 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 + Y+eCl+NhAaslG++a+DGCgEf+ + ++++ +l+CaACgCHRnFHR+ + Eucgr.H00572.1.p 7 NEAYRECLRNHAASLGSYATDGCGEFTLD---DTSPGSLQCAACGCHRNFHRKMT 58 678*************************8...6789****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.2E-24 | 9 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-17 | 10 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.008 | 10 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.5E-24 | 10 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-29 | 101 | 173 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.8E-17 | 101 | 171 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.5E-27 | 113 | 171 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MEGDNRNEAY RECLRNHAAS LGSYATDGCG EFTLDDTSPG SLQCAACGCH RNFHRKMTYV 60 SAHAGSGGLM VCRSGGRDNA ELCGGELVEY GRGRQLNMAA DSPESGGGGS GVKKRFRTKF 120 TTDQKEKMLA FAEKLGWKMQ RKDEEDEIER FCRSVGVSRQ VFKVWMHNHK NSSSSSTSAS 180 TGNASSLTTQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-23 | 114 | 176 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H00572.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010069461.1 | 1e-140 | PREDICTED: zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A059AWK7 | 1e-139 | A0A059AWK7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010069461.1 | 1e-139 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18527 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 9e-41 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H00572.1.p |
Entrez Gene | 104456381 |