PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H00172.1.p
Common NameEUGRSUZ_H00172
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 156aa    MW: 16875.8 Da    PI: 10.0661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H00172.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-193485256
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      +y+GVr+++ +g+++AeIrd + +g  +r++lg+fgta++Aa+a+++a+ +++g+
  Eucgr.H00172.1.p 34 RYRGVRRRP-WGKYAAEIRDSTRRG--ARVWLGTFGTAKDAAQAYDRAAYAMRGH 85
                      6********.**********43343..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.64E-223493IPR016177DNA-binding domain
PfamPF008472.8E-143485IPR001471AP2/ERF domain
PROSITE profilePS5103222.9583492IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-303493IPR001471AP2/ERF domain
SMARTSM003808.2E-333498IPR001471AP2/ERF domain
PRINTSPR003672.4E-103546IPR001471AP2/ERF domain
CDDcd000184.16E-174393No hitNo description
PRINTSPR003672.4E-105874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MERENPRRKI EHEEGRGGGG GGGGGGGDGV PRVRYRGVRR RPWGKYAAEI RDSTRRGARV  60
WLGTFGTAKD AAQAYDRAAY AMRGHTAILN FPNEFPVGCK AGSSLPSLSL SSSAFSSLKT  120
RGGTRGRDKR VVEFECLDDN LLEELLENEG KNSME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-32241414114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H00172.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018715620.11e-109PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC53e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A059AU471e-107A0A059AU47_EUCGR; Uncharacterized protein
STRINGXP_010039174.19e-40(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.12e-17ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]