PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H00105.1.p | ||||||||
Common Name | EUGRSUZ_H00105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GATA | ||||||||
Protein Properties | Length: 252aa MW: 26998.3 Da PI: 9.8566 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.6 | 3.5e-18 | 171 | 205 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ kTp+WR gp+g ktLCnaCG+++++ +l Eucgr.H00105.1.p 171 CLHCGSEKTPQWRAGPQGAKTLCNACGVRFKSGRL 205 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.295 | 165 | 201 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.2E-16 | 165 | 215 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.23E-14 | 167 | 228 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-14 | 169 | 203 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.86E-13 | 170 | 218 | No hit | No description |
Pfam | PF00320 | 5.2E-16 | 171 | 205 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 171 | 196 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
VVDEEDDLGK SSCSKAKAAA AAAAAATSLP DSASFDASST PSLPEWEEEL EWISNKDSFP 60 SLESFVILPE QPGNNFKEDN LIPPLENSSS SSTTTSTHSS GNRSGTVTIA SCCGGPPLPF 120 RRARSKRARE RRHGDLSVFA AERLLISRDQ EKANKKTKLG GQGSVKIGRK CLHCGSEKTP 180 QWRAGPQGAK TLCNACGVRF KSGRLVPEYR PANSPTFSSE LHSNSHRKII EMRRTKQMGG 240 GGVKGVDIRV K* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H00105.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010025821.1 | 0.0 | PREDICTED: GATA transcription factor 1, partial | ||||
Swissprot | Q8LAU9 | 6e-47 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | A0A059ATX3 | 0.0 | A0A059ATX3_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010025821.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12987 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 7e-43 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H00105.1.p |