PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G03185.1.p
Common NameEUGRSUZ_G03185, LOC104454497
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 648aa    MW: 73905 Da    PI: 7.8547
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G03185.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.91e-07460501240
                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                       ++W +eE ell ++ +++++g   +W+ I++++g+gR+ +++
  Eucgr.G03185.1.p 460 KPWGKEEIELLRKGMTKYPKGtshRWEVISEYIGTGRSVEEI 501
                       69***********************************99876 PP
2Myb_DNA-binding28.53.5e-09590634345
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                        W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
  Eucgr.G03185.1.p 590 VWSAVQERALVQALKTFPKDtnqRWERVAAAVP-GKTVNQCKKKFA 634
                       6********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.1E-2091185IPR001623DnaJ domain
SuperFamilySSF465659.55E-2092200IPR001623DnaJ domain
SMARTSM002711.3E-1394169IPR001623DnaJ domain
PROSITE profilePS5007618.37995177IPR001623DnaJ domain
CDDcd062571.46E-1295166IPR001623DnaJ domain
PfamPF002264.5E-1795174IPR001623DnaJ domain
PRINTSPR006257.1E-9100118IPR001623DnaJ domain
PRINTSPR006257.1E-9118133IPR001623DnaJ domain
PRINTSPR006257.1E-9149169IPR001623DnaJ domain
PROSITE patternPS006360154173IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.603.0E-4455501IPR009057Homeodomain-like
SuperFamilySSF466894.56E-7456502IPR009057Homeodomain-like
PROSITE profilePS512936.128457512IPR017884SANT domain
SMARTSM007179.3E-5458511IPR001005SANT/Myb domain
PfamPF002491.1E-5460501IPR001005SANT/Myb domain
CDDcd001676.61E-4461501No hitNo description
PROSITE profilePS5129311.093586641IPR017884SANT domain
SMARTSM007171.0E-9587639IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-5588633IPR009057Homeodomain-like
SuperFamilySSF466891.79E-9589644IPR009057Homeodomain-like
PfamPF002491.2E-7590633IPR001005SANT/Myb domain
CDDcd001671.85E-6591637No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MAIQMSRLIS YSDEIVGGQP IYVASNCLPV KALKYEPAGH AFHAAAMKLL GCEEEDVDGS  60
DQTVVGDKEQ TSMPSFDSYS SKGKKKAGSG SNQQDHYALL GLSHLRYLAT EDQIKKSYRE  120
TALKYHPDKQ ASLLLAEETE AAKQAKKDEI ENHFKAIQES YEVLIDPLKR RIYDSTDEFD  180
DEIPTDCAPQ DFYKVFAPAF MRNGRWSVNQ PIPSLGDENT TIKEVDNFYN FWYSFKSWRE  240
FPHADEFDIE QAESRDHKRW MERQNAKLTE KARKEEYARV RTLVDNAYKR DPRIQRRKEE  300
EKAERQRKKV AKYLAKKLQE EEAARIAEEE KRRKEEDEKR AAEAALQQKK VKEREKKLLR  360
KERTRLRTFS APIISQHLLD LSEDDVETLC MSLDIEALRS LCGQMEGREG LERAEILRNA  420
RGGQPKSEDK KQGDKKNEQP NSSVEANGSV PLSNFEKQEK PWGKEEIELL RKGMTKYPKG  480
TSHRWEVISE YIGTGRSVEE ILKATKTVLL QKPDSSKAFD SFLEKRKPAQ SIASPLTTRE  540
EVGETIIPTA ESTAVKTDNG EASSRKVVNN QDPNDLVTEN GSSSSSEQDV WSAVQERALV  600
QALKTFPKDT NQRWERVAAA VPGKTVNQCK KKFALLKESF RNKKSSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-2019129520124Zuotin
5dje_B1e-2019129520124Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G03185.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067661.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A059BI980.0A0A059BI98_EUCGR; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain