PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G03144.1.p
Common NameEUGRSUZ_G03144
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 190aa    MW: 20837.3 Da    PI: 8.7857
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G03144.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.43e-2844104259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       dDg++WrKYGqK + gs++pr+YYrCt++   +Cp+kk+v+r +++p+++e++Y+g+H+++
  Eucgr.G03144.1.p  44 DDGHTWRKYGQKAILGSNYPRGYYRCTHQklyQCPAKKQVQRLDDNPHFFEVIYHGDHTCH 104
                       8****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-2738105IPR003657WRKY domain
SuperFamilySSF1182901.44E-2541105IPR003657WRKY domain
SMARTSM007744.5E-3643105IPR003657WRKY domain
PROSITE profilePS5081119.88744106IPR003657WRKY domain
PfamPF031067.0E-2644104IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEVSSDLNRS ASSSQRSRRR RDEGEKRVIR VAAPQMGNTD IPPDDGHTWR KYGQKAILGS  60
NYPRGYYRCT HQKLYQCPAK KQVQRLDDNP HFFEVIYHGD HTCHMSSTAP LFPPLPPSAN  120
AIPMDLQLGG FSGSSSTNPV VVGSGSSASA ARYDVIEYPV EEMAAAMFNP GTSNTGTIDM  180
IFPRSKEGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-1844103968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G03144.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067620.11e-141PREDICTED: WRKY transcription factor 55
TrEMBLA0A059BIB21e-140A0A059BIB2_EUCGR; Uncharacterized protein
STRINGXP_010067620.11e-140(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.17e-46WRKY DNA-binding protein 55