PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02840.1.p
Common NameEUGRSUZ_G02840, LOC104454219
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 334aa    MW: 36260.6 Da    PI: 5.6286
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02840.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17245278134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Eucgr.G02840.1.p 245 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 278
                       99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.2E-722321IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.503239275IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-16239289IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.5E-15243276IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-15243302No hitNo description
CDDcd002022.09E-14244293No hitNo description
PROSITE patternPS003440245270IPR000679Zinc finger, GATA-type
PfamPF003202.3E-15245278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPGQNIMEEI DCGSFFDQID DLLDFPSDDV EAGLPPIDHD SFPSFWSDQP QSLPGSGSGV  60
GSVFEAHPGS DLSAHLSVPY EDIVQMEWLS NLMDDSFSSD PLTINDQDPS KAQPVSHAQF  120
QTSSPISVLD SSSSCTDEKA APRSPEAINL ARCGRARSKR PRPRTFNPRP PVQLISPTSS  180
VGENPQPVDS ESHVESRPVI KIPRQVNPEQ KKKKKIKFTM STAAAAAASA DTSQSSATAQ  240
AVRKCMHCEI TKTPQWRAGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FIPSLHSNSH  300
KKVLEMRSNV GDPEAMASPP ELIPNRAVEM EYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158162KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02840.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067308.10.0PREDICTED: GATA transcription factor 8
TrEMBLA0A059BGU30.0A0A059BGU3_EUCGR; GATA transcription factor
STRINGXP_010067308.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-40GATA family protein