PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02459.1.p
Common NameEUGRSUZ_G02459, LOC104453908
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 312aa    MW: 32732.9 Da    PI: 7.3022
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02459.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.4e-32162219259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vk+s++prsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  Eucgr.G02459.1.p 162 EDGYRWRKYGQKAVKNSPHPRSYYRCTNSRCTVKKRVERSSEDPTIVITTYEGQHCHH 219
                       8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-34146219IPR003657WRKY domain
SuperFamilySSF1182904.97E-28153219IPR003657WRKY domain
PROSITE profilePS5081130.033156221IPR003657WRKY domain
SMARTSM007741.6E-37161220IPR003657WRKY domain
PfamPF031062.7E-25162219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDDDDDRPPE PGADFGGGGG SSWPHLGPYS DGVYFLGAGA TESSILGEFG WNLRPDDELR  60
APPGRPGPRV GGGAFDPAGA SAAAGGGGGG GFGGSDPSAA GGEASTSNAS DSSASEDPPE  120
KSGSSGGKPP PETPNKVRRK GQKRIRQPRF AFMTKSEVDN LEDGYRWRKY GQKAVKNSPH  180
PRSYYRCTNS RCTVKKRVER SSEDPTIVIT TYEGQHCHHS AGFPRGGFVI SRDATGLVGG  240
RLAPLATHLD HPPFQLPQEI SPPPHPPSNY LRSTQLPSSS SGDSRALQVH NLADIDQGLL  300
GDIVPPGMRN R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24152218874Probable WRKY transcription factor 4
2lex_A2e-24152218874Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02459.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066855.10.0PREDICTED: probable WRKY transcription factor 57 isoform X1
RefseqXP_010066856.10.0PREDICTED: probable WRKY transcription factor 57 isoform X1
TrEMBLA0A059BFB90.0A0A059BFB9_EUCGR; Uncharacterized protein
STRINGXP_010066855.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49952753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-67WRKY DNA-binding protein 57