PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G02321.1.p | ||||||||
Common Name | EUGRSUZ_G02321 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 23428.5 Da PI: 7.8276 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.9 | 1.8e-29 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++dCv++p++ +++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ + Eucgr.G02321.1.p 4 SCNGCRVLRKGCSDDCVIRPCLqwiksADSQAHATVFLAKFYGRAGLINLINAGPPHLRPAIFKSLLYEACGRIINPIYGSVGLLWSGNWGHC 96 6*********************9999667889************************************************************* PP DUF260 89 qlkaelallk 98 q++++++l++ Eucgr.G02321.1.p 97 QAAVDAVLRG 106 **99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.19 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDDCV IRPCLQWIKS ADSQAHATVF LAKFYGRAGL INLINAGPPH 60 LRPAIFKSLL YEACGRIINP IYGSVGLLWS GNWGHCQAAV DAVLRGSSHI MRHPSLDSGS 120 TPAASQPHPA LKAYDIRHFP KAGGSQGLHR ARFKRPRLGV DLKPDGWPHP EASYSTSPED 180 DSVFSVETVE AEPEGPSQPS QILAFDGQGG ESDEDR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G02321.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010066723.1 | 1e-160 | PREDICTED: LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 1e-70 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A059BF38 | 1e-159 | A0A059BF38_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010066723.1 | 1e-160 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8463 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 6e-73 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G02321.1.p |