PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02040.2.p
Common NameEUGRSUZ_G02040
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 604aa    MW: 66447.5 Da    PI: 9.0954
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02040.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-055577123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+k F r  nL+ H r H
  Eucgr.G02040.2.p 55 FVCEVCKKGFQREQNLQLHRRGH 77
                      89*******************88 PP
2zf-C2H213.10.00029133155123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k++  +s+ k H +t+
  Eucgr.G02040.2.p 133 WKCEKCSKRYAVQSDWKAHSKTC 155
                       58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.1E-55477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.97E-75477No hitNo description
SMARTSM003550.00965577IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7835577IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM0035513098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-5121154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.97E-7128153No hitNo description
SMARTSM00355130133153IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MPHQLHWLHQ QQHLHLQPQL QLPRKRSETN PETHANPDAE VIALSPKSLM ATNRFVCEVC  60
KKGFQREQNL QLHRRGHNLP WKLKQKGTNK EAVRRKVYLC PEPTCVHHDP SRALGDLTGI  120
KKHYSRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF  180
CDALAQENAR HPPTLNSIGN HSIYGSTNMG LGLSQANRQI PSMMQGQGIN HSNNNDISPL  240
GRARSGQLFD HLLAPSIGTA SSTFNQPLPS MGSPSPNSFL FQAQSNQSYN SQEQASPQQG  300
LLQNKPFHGL MMQQMIPDHV KSNNNNPSPS SSVANIFNLG MLSSSSSNSN NNSSSTSSLL  360
NSGLLVPDQH RFKSEIGSEG SNLLPRSIPD DHHQISSSGV PSLYSTSLLQ TGNHHDFSPP  420
HMSATALLQK AAQMGSSTSR TNTNNNASFL KTFASYSSSS GTKSDRSPLA PVSFTGIFGV  480
DNNLQELVNC AFGGGQDHHQ ESAGDAYDGM YDNANKTGSE QSTTTHMGQH GLTRDFLGVG  540
EIVRRVSNNV NNNGNNGGFM DVQREDDQRR QNQEKYGLMI SDDKAISSSL DSAPTSQTFG  600
DFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34129190364Zinc finger protein JACKDAW
5b3h_F1e-34129190364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02040.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066516.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic
RefseqXP_018715245.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic
TrEMBLA0A059BEA70.0A0A059BEA7_EUCGR; Uncharacterized protein
STRINGXP_010066516.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-106indeterminate(ID)-domain 5