PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G01083.1.p | ||||||||
Common Name | EUGRSUZ_G01083 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 29000.7 Da PI: 5.3721 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104 | 2e-32 | 5 | 133 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 ++GfrF Pt+eel++ yL+ kv g + +i+e+ d y ++PwdLp ++ ++ +wyfF+++ +++++r +r+t+sg Wk t Eucgr.G01083.1.p 5 QVGFRFLPTEEELLNGYLTSKVLGYADGC--IIPELdDFYAWDPWDLPGlyqqisNIPSDGLDWYFFCPSPYLAQNSERVKRQTRSGKWKITC 95 68***********************9777..7999989**********53554444444666******************************* PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ e++++ ++ l+g+k++Lvf kgra kt Wvmhey+l Eucgr.G01083.1.p 96 QKDEIKARdTKVLIGTKRILVFNKGRA----KTGWVMHEYHL 133 ******9956667**********8887....678*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-36 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.385 | 4 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-21 | 6 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEQFQVGFRF LPTEEELLNG YLTSKVLGYA DGCIIPELDD FYAWDPWDLP GLYQQISNIP 60 SDGLDWYFFC PSPYLAQNSE RVKRQTRSGK WKITCQKDEI KARDTKVLIG TKRILVFNKG 120 RAKTGWVMHE YHLNPKLLNG YSSTFQIPYI LCRLKRKPSE SLDISPSFEG GSSVTYDSPV 180 ASQRELTEDS NQESSFQATA ESLLPFQTLD DNLPDYNSYG SFHPQPHLYD DGQVQFTKPI 240 VLITWRNKLT VQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-20 | 7 | 161 | 20 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-20 | 7 | 161 | 20 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-20 | 7 | 161 | 20 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-20 | 7 | 161 | 20 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-20 | 7 | 161 | 20 | 169 | NAC domain-containing protein 19 |
4dul_B | 4e-20 | 7 | 161 | 20 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G01083.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010026029.1 | 1e-107 | PREDICTED: protein NTM1-like 9 | ||||
TrEMBL | A0A059BC72 | 0.0 | A0A059BC72_EUCGR; Uncharacterized protein | ||||
STRING | XP_010068322.1 | 1e-174 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16613 | 2 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.2 | 1e-37 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G01083.1.p |