PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01053.1.p
Common NameEUGRSUZ_G01053, LOC104452960
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 541aa    MW: 61641.1 Da    PI: 6.8799
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.71.3e-24241473128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvka......eekewyfFskrdkkyatgkrknratksgy.Wkatg 87 
                       +G+ F+Pt+eel+ +y+k +v g++ ++  +i+++ diykv+PwdLp+k+k+      +++ew+f ++r ++    +r +r+t  gy Wk tg
  Eucgr.G01053.1.p  24 VGYGFRPTEEELI-NYMKLEVPGRRESF-CIIPTLdDIYKVNPWDLPAKFKEnsiipsNDQEWWFICPRTQT----QRISRKTPCGYsWKITG 110
                       79***********.9**********887.67888879**********64444345555889*******9875....5999****9*99***** PP

               NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++k++++  +++++g k  L+f      +g++t+Wv+hey+l
  Eucgr.G01053.1.p 111 SHKDIKAGnDDKKIGSKIPLIFQ-----DGVQTNWVIHEYHL 147
                       *****99767888*********7.....8999********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-2818163IPR003441NAC domain
PROSITE profilePS5100529.60722164IPR003441NAC domain
PfamPF023655.5E-1324147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
METRIYPISY DVKEIALSLQ RAIVGYGFRP TEEELINYMK LEVPGRRESF CIIPTLDDIY  60
KVNPWDLPAK FKENSIIPSN DQEWWFICPR TQTQRISRKT PCGYSWKITG SHKDIKAGND  120
DKKIGSKIPL IFQDGVQTNW VIHEYHLLDN DFNRNYVLCH LKRRRDEKAD NSSIASDHGA  180
NYLVDLESYL HQPDHEGSFP EYSIQAMMGS LIEESPTVMD FTSDNGHTDD YSQLLPETGK  240
EDEYMLFEDL FDADFFHGDE MQIQLRDGQT SNLHNERPVL MKHQRTQTID SLPGVVPFDG  300
KKGMVENKFS SPLVVPKKPM ALPVYTASVK YNGKDEVPGF RNVRQETVAQ SIKPERIYLD  360
ETAARTKSGQ ISIMENRRTQ TIGSLHGVFP LEQKKAIIQS KLNSSRVSSA KPMELLSKPV  420
TPKMPEPPKI YVNEELRLEK VKKQEITLRN VKTECVSWDE AAATAKVPKY RDYCSASNSS  480
GKKTSREIEH AREKANSVTT LIRPTTKSEE SSINPPLHNL VNMLIGIFLL CAITCQVFNL  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-132516520166NO APICAL MERISTEM PROTEIN
1ut4_B5e-132516520166NO APICAL MERISTEM PROTEIN
1ut7_A5e-132516520166NO APICAL MERISTEM PROTEIN
1ut7_B5e-132516520166NO APICAL MERISTEM PROTEIN
3swm_A6e-132516523169NAC domain-containing protein 19
3swm_B6e-132516523169NAC domain-containing protein 19
3swm_C6e-132516523169NAC domain-containing protein 19
3swm_D6e-132516523169NAC domain-containing protein 19
3swp_A6e-132516523169NAC domain-containing protein 19
3swp_B6e-132516523169NAC domain-containing protein 19
3swp_C6e-132516523169NAC domain-containing protein 19
3swp_D6e-132516523169NAC domain-containing protein 19
4dul_A5e-132516520166NAC domain-containing protein 19
4dul_B5e-132516520166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01053.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065762.10.0PREDICTED: NAC domain-containing protein 1 isoform X1
TrEMBLA0A059BB250.0A0A059BB25_EUCGR; Uncharacterized protein
STRINGXP_010065762.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2778723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.21e-25NAC transcription factor-like 9