PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G00085.1.p

Common Name

EUGRSUZ_G00085, LOC104452473

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 680aa MW: 78220 Da PI: 7.7173

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G00085.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.4	1.8e-21	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ +w+vt ++++HnHel Eucgr.G00085.1.p 62 EFYSEFAKQCGFSIRRHRTEGKeGVGKGLTRRYFVCHRAGNTPVKTTNESKPQRNRKSSRCGCQAYMRISKTTdlgAPEWRVTGFVNHHNHEL 154 6************9998876356667999***********99999****************99887789***********9 PP FAR1 90 a 90 Eucgr.G00085.1.p 155 L 155 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-18	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-20	278	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.297	556	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-6	559	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.4E-5	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MSIGSGQMLV VYDDPSDQHS FSLDDNSSAE ESLDETRLSL ESTNETVPYI GQRFDTHDAA 60 YEFYSEFAKQ CGFSIRRHRT EGKEGVGKGL TRRYFVCHRA GNTPVKTTNE SKPQRNRKSS 120 RCGCQAYMRI SKTTDLGAPE WRVTGFVNHH NHELLEPNQV RFLPAYRTIS DTDKSRILMF 180 AKTGISIQQM MRLMELEKCV EPGYLPFTEK DVRNLLQSFR KIDPEDESTD LLRMCRNIKE 240 KDPNFRFEYT LDSNNGLENI AWSYASSIQS YEIFGDAVVF DTTHRLTAFD MPLGLWVGIN 300 NYGMPCFFGC VLMREENLRS YSWALKVFLG FMNGKPPQTI LTDQNMCLKE AISMEMQTTK 360 HALCIWMIVA KFPSWFNAVL GERYNEWKSE FYRLYNTESI EEFEIGWKEM QNFFGLHSNR 420 HIINLFALRA YWALPYLRNY FFAGMTSPGQ SKSINSFIQR FLSAQTRLAH FVEQVAVAVD 480 FKDQAGEQQT MQQNLQNISL KTGAPMESHA ATVLTPFAFS KLQEQLVLAA HYASFQMEDG 540 FLVRHHTKLE GGRKVYWIPR EGIISCSCHL FEFSGILCRH SLRVLSTGNC FQIPDKYLPL 600 RWRKISTSSS KLPHNTPSDH AERLQFLQSM VSNLMSESAK SKERLELATE QVSILLSRIR 660 EQPVSSLVLR DAASIHRNF*

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MSIGSGQMLV VYDDPSDQHS FSLDDNSSAE ESLDETRLSL ESTNETVPYI GQRFDTHDAA  60
YEFYSEFAKQ CGFSIRRHRT EGKEGVGKGL TRRYFVCHRA GNTPVKTTNE SKPQRNRKSS  120
RCGCQAYMRI SKTTDLGAPE WRVTGFVNHH NHELLEPNQV RFLPAYRTIS DTDKSRILMF  180
AKTGISIQQM MRLMELEKCV EPGYLPFTEK DVRNLLQSFR KIDPEDESTD LLRMCRNIKE  240
KDPNFRFEYT LDSNNGLENI AWSYASSIQS YEIFGDAVVF DTTHRLTAFD MPLGLWVGIN  300
NYGMPCFFGC VLMREENLRS YSWALKVFLG FMNGKPPQTI LTDQNMCLKE AISMEMQTTK  360
HALCIWMIVA KFPSWFNAVL GERYNEWKSE FYRLYNTESI EEFEIGWKEM QNFFGLHSNR  420
HIINLFALRA YWALPYLRNY FFAGMTSPGQ SKSINSFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQAGEQQT MQQNLQNISL KTGAPMESHA ATVLTPFAFS KLQEQLVLAA HYASFQMEDG  540
FLVRHHTKLE GGRKVYWIPR EGIISCSCHL FEFSGILCRH SLRVLSTGNC FQIPDKYLPL  600
RWRKISTSSS KLPHNTPSDH AERLQFLQSM VSNLMSESAK SKERLELATE QVSILLSRIR  660
EQPVSSLVLR DAASIHRNF*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G00085.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010065254.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A059B9M9	0.0	A0A059B9M9_EUCGR; Uncharacterized protein
STRING	XP_010065254.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Eucgr.G00085.1.p
Entrez Gene	104452473

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]