PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F04422.1.p | ||||||||
Common Name | EUGRSUZ_F04422 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 184aa MW: 21288 Da PI: 8.4718 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 8.2e-17 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+eEd +l+++++ G ++W +Ia++ g++R++k+c++rw +yl Eucgr.F04422.1.p 10 KEAWTAEEDRKLAEVIAVSGARRWQAIAAKAGLNRSGKSCRLRWMNYL 57 579*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.4e-16 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Eucgr.F04422.1.p 63 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 108 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.994 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.28E-28 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-14 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 12 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.62E-10 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 25.672 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 63 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 65 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.91E-10 | 67 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MEGRIKKINK EAWTAEEDRK LAEVIAVSGA RRWQAIAAKA GLNRSGKSCR LRWMNYLRPN 60 IKRGNISDQE EDLILRLHKL LGNRWSLIAG RLPGRTDNEI KNYWNSHLSK KINNRKEKQI 120 SQASSEGDEM EQVRELEEKK SSESSEDHLK AIASFDMDDL FDFSMRTPLN LGWPSEFLLS 180 EDDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-28 | 5 | 114 | 2 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F04422.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010064040.1 | 1e-131 | PREDICTED: transcription factor MYB114 | ||||
Swissprot | Q9SEI0 | 6e-50 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A059BYQ1 | 1e-130 | A0A059BYQ1_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010064040.1 | 1e-131 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 2e-51 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F04422.1.p |