PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F04203.1.p
Common NameEUGRSUZ_F04203, LOC104450834
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 388aa    MW: 40923.1 Da    PI: 7.0856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F04203.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.9e-21147196255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae Aa+a+++a+++++g
  Eucgr.F04203.1.p 147 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEAAARAYDEAALRFRG 196
                       7********.**********93....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-36147210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-33147205IPR001471AP2/ERF domain
PROSITE profilePS5103225.883147204IPR001471AP2/ERF domain
PfamPF008471.5E-14147196IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22147205IPR016177DNA-binding domain
PRINTSPR003671.0E-11148159IPR001471AP2/ERF domain
CDDcd000181.24E-14155206No hitNo description
PRINTSPR003671.0E-11170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEEAVMPMYS PYCPPGETSA IVSALTHVVT GTRGGQHGGA YQSTLAPSFA YDSASAGSSS  60
QLPWTYIGQK RERDEAGSSS QFLAEPPLSQ RDYYGIYGGS FALRETSAIS ASLPGLQART  120
VAATSNVPPP PSGAGPPPYE GGERRRRYRG VRQRPWGKWA AEIRDPQKAA RVWLGTFDTA  180
EAAARAYDEA ALRFRGNRAK LNFPENVRVI PPNVPTYGSP AAAAATLAAG SAPPAIAAGQ  240
LAPPYAGAVP LYPRGSEGFN LGDYWEYSQL LQGHHHHQPA SLMEQMMYSS QMASSHSSLS  300
LPSSSPPQPP PPPPSFPSSD LYGSSSSSGF GGASSFSSSV PLFFPQQPPL GYFRPPPPRP  360
PHDQGSGGED SEPPPSSDSS HYHSSTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22148207666ATERF1
3gcc_A1e-22148207666ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147ERRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F04203.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063839.10.0PREDICTED: ethylene-responsive transcription factor ABR1
TrEMBLA0A059BYQ00.0A0A059BYQ0_EUCGR; Uncharacterized protein
STRINGXP_010063839.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.18e-13ERF family protein