PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F03955.2.p | ||||||||
Common Name | EUGRSUZ_F03955 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | WRKY | ||||||||
Protein Properties | Length: 341aa MW: 37632.7 Da PI: 7.3112 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.5 | 1.5e-29 | 158 | 217 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed+ v++ tYegeHnh+ Eucgr.F03955.2.p 158 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSVEDQAVLVATYEGEHNHP 217 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-28 | 151 | 218 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-25 | 156 | 218 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.522 | 157 | 219 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-34 | 158 | 218 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-24 | 159 | 217 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MDYSSCISTS LDLNIRPLRP HDEAPREPQE TDFMDLGLNT SAKEETGALV EELNRVSAEN 60 KKLTQMLTVM CENYNTLRSQ VMDYMSKNAE KELSPSKKRK CDSNNNIGEN NNNILANGAS 120 ESSSTDEDSS KKPREEKITA KISRLYVRTE ASDTGLIVKD GYQWRKYGQK VTRDNPCPRA 180 YFKCSFAPSC PVKKKVQRSV EDQAVLVATY EGEHNHPTQM EETQGSSRCM AIGSVPCSTS 240 LNSSGPTITL DLTKSKSPIV SPSSNNNNDN NNNNNNNNNN NNSNSNSNNI TLKPKTESPE 300 IQRFLVEQMA SSLTKDPSFT AALAAAISGK IFHQNPTGKW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-19 | 157 | 216 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F03955.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018731692.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 1e-96 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A059BX30 | 0.0 | A0A059BX30_EUCGR; Uncharacterized protein | ||||
STRING | XP_010063565.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 9e-91 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F03955.2.p |