PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F03955.1.p | ||||||||
Common Name | EUGRSUZ_F03955, LOC104450623 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | WRKY | ||||||||
Protein Properties | Length: 342aa MW: 37760.9 Da PI: 7.6956 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.5 | 1.5e-29 | 159 | 218 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed+ v++ tYegeHnh+ Eucgr.F03955.1.p 159 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSVEDQAVLVATYEGEHNHP 218 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-28 | 152 | 219 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-25 | 157 | 219 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.522 | 158 | 220 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-34 | 159 | 219 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-24 | 160 | 218 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MDYSSCISTS LDLNIRPLRP HDEAPKREPQ ETDFMDLGLN TSAKEETGAL VEELNRVSAE 60 NKKLTQMLTV MCENYNTLRS QVMDYMSKNA EKELSPSKKR KCDSNNNIGE NNNNILANGA 120 SESSSTDEDS SKKPREEKIT AKISRLYVRT EASDTGLIVK DGYQWRKYGQ KVTRDNPCPR 180 AYFKCSFAPS CPVKKKVQRS VEDQAVLVAT YEGEHNHPTQ MEETQGSSRC MAIGSVPCST 240 SLNSSGPTIT LDLTKSKSPI VSPSSNNNND NNNNNNNNNN NNNSNSNSNN ITLKPKTESP 300 EIQRFLVEQM ASSLTKDPSF TAALAAAISG KIFHQNPTGK W* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-19 | 158 | 217 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F03955.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018731692.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 2e-96 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A059BXF1 | 0.0 | A0A059BXF1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010063565.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2477 | 28 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-90 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F03955.1.p |
Entrez Gene | 104450623 |