PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03105.1.p
Common NameEUGRSUZ_F03105
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Dof
Protein Properties Length: 184aa    MW: 19545.8 Da    PI: 9.5583
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03105.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1244.9e-391776362
            zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                      ++ l cprCdstntkfCy+nny+lsqPr+fCk+C+ryWtkGG+lrn+PvGgg+rk+ +++
  Eucgr.F03105.1.p 17 QERLICPRCDSTNTKFCYFNNYNLSQPRHFCKNCKRYWTKGGSLRNIPVGGGTRKKSSTK 76
                      67889**************************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-271471IPR003851Zinc finger, Dof-type
PfamPF027018.8E-331974IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7612074IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102258IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MQETTAFQST KLLFPEQERL ICPRCDSTNT KFCYFNNYNL SQPRHFCKNC KRYWTKGGSL  60
RNIPVGGGTR KKSSTKRASN PKRQNPDPDP DPRPSKHGLQ LQESATADSL QSNATEGALL  120
EGPNSSGLGA GSGGYGVSLN PGSSLGLGSV MGPEPELDSR REEGSVLGSG GKPARTVLLS  180
VGM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03105.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8572549e-36DQ857254.1 Glycine max Dof4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062587.11e-95PREDICTED: dof zinc finger protein DOF3.1
SwissprotO821552e-37DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A059BUT81e-131A0A059BUT8_EUCGR; Uncharacterized protein
STRINGXP_010062587.15e-95(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.11e-38DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]