PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03062.1.p
Common NameEUGRSUZ_F03062, LOC104449907
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 277aa    MW: 28919.3 Da    PI: 5.7623
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-1975125155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Eucgr.F03062.1.p  75 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALSIKG 125
                       68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.6E-1375125IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2276134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-3276134IPR001471AP2/ERF domain
SMARTSM003801.7E-3776139IPR001471AP2/ERF domain
PROSITE profilePS5103223.73676133IPR001471AP2/ERF domain
CDDcd000185.82E-3177135No hitNo description
PRINTSPR003671.1E-107788IPR001471AP2/ERF domain
PRINTSPR003671.1E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MPEPPLTAGA EAAAASSSPI PSPASPSSSS GSSYVSNPEP SRDKSKARAA AREGEGRPAA  60
AAAAKRARDE GSKHPVYRGV RMRSWGKWVS EIREPRKKSR IWLGTFPTAE MAARAHDVAA  120
LSIKGKSAVL NFPHLAKLLP RPASLAPRDI QAAATRAAAM DVDPATPGSA VSPPPPPPPP  180
SCSKGAEPEE LSEIIELPNI EGGFGFGSGF GFGFGPSGSS SSGDVLFADT VDYGWAEDQP  240
RWLIESGDAD FGAEFLHRFL AADSNYPLEF EALVRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2068134673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03062.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3559754e-45AK355975.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1028H04.
GenBankKM5761314e-45KM576131.1 Oryza rufipogon dehydration responsive element binding protein 4-2 (DREB4-2) gene, promoter region and complete cds.
GenBankKM5881014e-45KM588101.1 Deschampsia antarctica CBF-like protein CBF7 (CBF7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062516.10.0PREDICTED: ethylene-responsive transcription factor ERF036
SwissprotQ9M0808e-54ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A059BVI50.0A0A059BVI5_EUCGR; Uncharacterized protein
STRINGXP_010062516.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.17e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]